Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_02115 and BL03749

See DNA alignment / Visit BSNT_02115 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence pep-align/BSNT_02115___xkdA.1.5803.seq
#    -bsequence pep-align/BL03749___xkdA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02115___xkdA-BL03749___xkdA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02115___xkdA-BL03749___xkdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02115___xkdA
# 2: BL03749___xkdA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 218
# Identity:     115/218 (52.8%)
# Similarity:   148/218 (67.9%)
# Gaps:          20/218 ( 9.2%)
# Score: 602.0
# 
#
#=======================================

BSNT_02115___      1 MGDYLSHLEEYVKNLYGRLGITSPHHIDMLKIAKDLDIWVHFEDMGSMMV     50
                     |..|||||||||||:|.:.|...||.|||.:||...:||:|:|::.|||:
BL03749___xkd      1 MKFYLSHLEEYVKNMYQKFGFFEPHQIDMNRIAAHFNIWIHYENVNSMMI     50

BSNT_02115___     51 KYDGMYSIVLNQKKSREEQWEDFGHELCHVLKHAGNHFQMNKLFRELQEF    100
                     |:||||||:||...|:|:|||||.||||||||||||...||::|||||||
BL03749___xkd     51 KHDGMYSIILNSSLSKEKQWEDFAHELCHVLKHAGNQLYMNQMFRELQEF    100

BSNT_02115___    101 QANQFMYHFCVPTFMLLQMELPQWRSQALATIAAVFRVTKEFADKRLDMF    150
                     |||||||||||||||||:|:.||.|.||...||.:|:||:.||.||:::|
BL03749___xkd    101 QANQFMYHFCVPTFMLLKMDFPQLRCQAAKMIADLFKVTESFAVKRIELF    150

BSNT_02115___    151 ERRKAGIQFQKRLAYLLSHKRPNA----YEEGDQQHLQVAEEKALY----    192
                     |:|:|||||.:.....||.:..:|    :||.|:......|.:..|    
BL03749___xkd    151 EKRQAGIQFHEAWMASLSQESESANAPRFEEVDELARYRRETRRPYAAAN    200

BSNT_02115___    193 HIGKNI------------    198
                     .:||.:            
BL03749___xkd    201 GLGKMVAAESRPAYMLRK    218


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.