Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02115 and BL03749
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_02115___xkdA.1.5803.seq
# -bsequence dna-align/BL03749___xkdA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02115___xkdA-BL03749___xkdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02115___xkdA-BL03749___xkdA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02115___xkdA
# 2: BL03749___xkdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 714
# Identity: 409/714 (57.3%)
# Similarity: 409/714 (57.3%)
# Gaps: 174/714 (24.4%)
# Score: 1145.0
#
#
#=======================================
BSNT_02115___ 1 ------TTGGGCGATTACTTATCACATCTGGAGGAATACGTTAAAAATTT 44
|| |||.|||||.||.||.||.||||||||.||||||.|
BL03749___xkd 1 TTGAAGTT------TTATTTATCTCACCTAGAAGAATACGTCAAAAATAT 44
BSNT_02115___ 45 ATACGGCCGGCTGGGCATCACATC-----------CCCTCATCACATTGA 83
.||| ||..|..|| .|||||.||.|||||
BL03749___xkd 45 GTAC-----------CAAAAGTTCGGTTTTTTTGAACCTCACCAGATTGA 83
BSNT_02115___ 84 CATGCTGAAAATCGCAAAG-----GATCTGGATATTTGGGTGCATTTTGA 128
.||| |||||||.|| .||.|..||||||||.|.||.|.|||
BL03749___xkd 84 TATG-----AATCGCATAGCCGCTCATTTTAATATTTGGATTCACTATGA 128
BSNT_02115___ 129 GGATATGGGGAGCATGATGGTGAAATACGACGGCATGTACAGTATCGTAT 178
..||.|....|||||||||.|.||..|.||||||||||||||.|| |||
BL03749___xkd 129 AAATGTCAACAGCATGATGATTAAGCATGACGGCATGTACAGCAT--TAT 176
BSNT_02115___ 179 TGAAC-CAAAAAAAG----TCACGGGAAGAGCAATGGGAGGATTTTGGCC 223
| | |||.|..|| |||..||||.||||.||||||||.||||.||
BL03749___xkd 177 T---CTCAACAGCAGTCTTTCAAAGGAAAAGCAGTGGGAGGACTTTGCCC 223
BSNT_02115___ 224 ATGAGCTGTGCCACGTGTTAAAGCATGCAGGCAATCATTTTCAGATGAAC 273
||||||||||||||||.||||||||.||.||.||.||..||.|.|||||.
BL03749___xkd 224 ATGAGCTGTGCCACGTATTAAAGCACGCCGGAAACCAGCTTTACATGAAT 273
BSNT_02115___ 274 AAGCTCTTCAGAGAGCTTCAAGAATTCCAGGCAAATCAATTTATGTACCA 323
.||.|.|||||.|||||.||.||.||||||||.|||||||||||||||||
BL03749___xkd 274 CAGATGTTCAGGGAGCTGCAGGAGTTCCAGGCCAATCAATTTATGTACCA 323
BSNT_02115___ 324 CTTCTGTGTGCCAACCTTTATGCTGTTGCAGATGGAACTGCCGCAATGGA 373
.||.||.||.||.||.||||||||.||..|.|||||..|.||.||...|.
BL03749___xkd 324 TTTTTGCGTCCCTACTTTTATGCTTTTAAAAATGGATTTTCCTCAGCTGC 373
BSNT_02115___ 374 GAAGCCAGGCACTCGCCACAATTG--CGGCG--GTATTCCGGGTAACAAA 419
||.||||.|| |||.| ||.|| ||.|| .|.||....||.||..|
BL03749___xkd 374 GATGCCAAGC---CGCTA-AAATGATCGCCGACCTCTTTAAAGTCACGGA 419
BSNT_02115___ 420 GGAATTTGCTGATAAAAGGCTTGACATGTTTG---AACGGCGTAAAGCAG 466
|...||.||||..|||.||.|.||..|.|||| |||||| |.||.|
BL03749___xkd 420 GTCGTTCGCTGTCAAACGGATCGAGCTCTTTGAAAAACGGC---AGGCCG 466
BSNT_02115___ 467 GTATTCAATTTCA-GAAGC------GGCTCG-CTTATTTATTATCTCACA 508
|.||.||.||||| ||.|| |||..| ||| ||.||
BL03749___xkd 467 GAATCCAGTTTCATGAGGCGTGGATGGCAAGCCTT----------TCCCA 506
BSNT_02115___ 509 AG---------CGGCCAAATGC----------------GTACGAGGAA-- 531
|| ||| |.||||| ||| ||.|||
BL03749___xkd 507 AGAGAGCGAATCGG-CGAATGCTCCACGCTTTGAAGAAGTA-GACGAACT 554
BSNT_02115___ 532 -----------GGCG----ATCAGCAGCACTT------------------ 548
|||| |.|.||.||.|.|
BL03749___xkd 555 TGCACGCTACCGGCGGGAAACCCGCCGCCCGTACGCAGCGGCAAACGGCC 604
BSNT_02115___ 549 ---GCA----GGTCGCTGAGGAAAAAGC-------GTTATAT-CATATTG 583
||| ||||||||.|| ||||| .|||||| | ||
BL03749___xkd 605 TCGGCAAAATGGTCGCTGCGG--AAAGCCGGCCGGCTTATATGC----TG 648
BSNT_02115___ 584 GCAAAAACATCTGA 597
..||||..|
BL03749___xkd 649 AGAAAATAA----- 657
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