Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_03732 and BL03709
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:45
# Commandline: needle
# -asequence pep-align/BSNT_03732___pbpA.1.5803.seq
# -bsequence pep-align/BL03709___pbpA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_03732___pbpA-BL03709___pbpA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03732___pbpA-BL03709___pbpA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03732___pbpA
# 2: BL03709___pbpA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 717
# Identity: 538/717 (75.0%)
# Similarity: 623/717 (86.9%)
# Gaps: 13/717 ( 1.8%)
# Score: 2806.0
#
#
#=======================================
BSNT_03732___ 1 MRRNKPKKQNHKEKKKSLPIRLNILFLAAFVIFTWIIVELGIKQIVQGDD 50
.||..| .||:||||||||||||.||:|||.::|.||:.|||.|:|
BL03709___pbp 1 --MNKKMK---NEKRKSLPIRLNILFLLAFIIFTIVVVRLGMVQIVFGED 45
BSNT_03732___ 51 YKNQANKQEQSEVSSAVPRGKIYDRNFNAIVTNKALNAITYTRSKSTTQE 100
|.|:..|||:.:||::||||||||||.|.||.||.:|||||||:.||:||
BL03709___pbp 46 YTNEVQKQEEVDVSTSVPRGKIYDRNLNTIVKNKPMNAITYTRTSSTSQE 95
BSNT_03732___ 101 QRLKIAKKLSDMIKVDTKKVTERDKKDYWILTRPKEAKKLISSKERQQVE 150
.||||||||::|||:||.|:|||||||||||||||||:|||:.::|::|:
BL03709___pbp 96 DRLKIAKKLAEMIKIDTDKITERDKKDYWILTRPKEAEKLITDEDRKKVK 145
BSNT_03732___ 151 DKKISDDDLYQLQLKRITDKQLNELTDKDMQILAIKRRMDSGYALTPQYI 200
|.|:.:||||||||.|||:.:||||||:|:::|||||:||||||||||||
BL03709___pbp 146 DGKLKEDDLYQLQLDRITEDKLNELTDQDLKVLAIKRQMDSGYALTPQYI 195
BSNT_03732___ 201 KNEDVSAKEMAVVSEHLDELPGVDVTSDWEREYPYKNLLRSVLGSVSSSN 250
||:.|:|||||||||||||||||||||||:|:|||..|||:::||:|.||
BL03709___pbp 196 KNKGVTAKEMAVVSEHLDELPGVDVTSDWKRDYPYNGLLRTMIGSISDSN 245
BSNT_03732___ 251 EGLPSNLLDHYLSLGYSRNDRVGKSYLEYQYESLLQGQKAKVENITDSKG 300
||||.:||||||||||:|||||||||||.:||::|||||.||:|||:..|
BL03709___pbp 246 EGLPKSLLDHYLSLGYNRNDRVGKSYLEAEYENVLQGQKEKVKNITNKSG 295
BSNT_03732___ 301 NVTGTKTVSEGKAGKDLVLTIDIDLQKSVEKIIEKKLKAAKARPSTELLD 350
::..|:.:||||:|||||||||:|:||::|||:|.:||:|||:.|..|||
BL03709___pbp 296 DIVDTEVISEGKSGKDLVLTIDVDMQKAIEKIVEDELKSAKAKHSAPLLD 345
BSNT_03732___ 351 RAFVVMMDPRNGEVLTMAGKQIKRENGAYKFDDYALGAMTSSYAMGSAVK 400
|||||||||||||||::||||:|.|:|..|.|||||||||||||||||||
BL03709___pbp 346 RAFVVMMDPRNGEVLSIAGKQLKNESGKLKVDDYALGAMTSSYAMGSAVK 395
BSNT_03732___ 401 GATVLTGLQTGAINLNTVFKDEPLYIGQDKRGKKSW-QNLGPVGIQTALE 449
|||||||||||||||||.|.|||||||:.| .|||| .|||.:|||.|||
BL03709___pbp 396 GATVLTGLQTGAINLNTTFLDEPLYIGKGK-PKKSWASNLGTLGIQGALE 444
BSNT_03732___ 450 KSSNVFMFKTAIAVGKGEYKPHQALPLDTSAFDTFRNYFSQFGLGVKTGI 499
|||||||||||||:|||:||.||.|.|.|.||||||.|||||||||||||
BL03709___pbp 445 KSSNVFMFKTAIALGKGQYKAHQPLDLQTKAFDTFRYYFSQFGLGVKTGI 494
BSNT_03732___ 500 DLPNEMTGYKGTSRLSGFLLDFAIGQYDTYTPLELAQYVSTIANGGYRMK 549
|||||.:||||:.||.||||||:||||||||||:||||||||||||||||
BL03709___pbp 495 DLPNEASGYKGSQRLPGFLLDFSIGQYDTYTPLQLAQYVSTIANGGYRMK 544
BSNT_03732___ 550 PQLVKEVRDSNAKKGIGAVVDSVQPEVLNKVDMKSSYIEEVQAGFRRVAT 599
||||||:|:.::|||||||..||||||||||||...||:|||.|||||.|
BL03709___pbp 545 PQLVKEIREPDSKKGIGAVTQSVQPEVLNKVDMSDEYIKEVQKGFRRVMT 594
BSNT_03732___ 600 KGTAAGQLASASYKPAAKTGTAQSFYDGPDKSKTGTDTYNTTLVAYAPAD 649
|||||||.||||||||.|||||||||||||||||||.|||||||||||.|
BL03709___pbp 595 KGTAAGQFASASYKPAGKTGTAQSFYDGPDKSKTGTSTYNTTLVAYAPYD 644
BSNT_03732___ 650 NPEIAISVVVPWTYIDYNQRYSITNEIGREVMDKYFELKSKQDKEDTQQK 699
|||:||||||||.|.||.|||||||||||:|:||||||||||.||:|.:|
BL03709___pbp 645 NPEVAISVVVPWVYNDYGQRYSITNEIGRKVLDKYFELKSKQSKENTVEK 694
BSNT_03732___ 700 NKDKIEENAENTTSSDN 716
||||||:.|..
BL03709___pbp 695 NKDKIEKEATE------ 705
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