Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03732 and BL03709

See Amino acid alignment / Visit BSNT_03732 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:45
# Commandline: needle
#    -asequence dna-align/BSNT_03732___pbpA.1.5803.seq
#    -bsequence dna-align/BL03709___pbpA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03732___pbpA-BL03709___pbpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03732___pbpA-BL03709___pbpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03732___pbpA
# 2: BL03709___pbpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2251
# Identity:    1547/2251 (68.7%)
# Similarity:  1547/2251 (68.7%)
# Gaps:         233/2251 (10.4%)
# Score: 5170.5
# 
#
#=======================================

BSNT_03732___      1 ATGAGGAGAAATAAACCAAAAAA-GCAAAATCATAAAGAGAAAAA--GAA     47
                               ||.|||.|||||| |.|||||        ||||||  .||
BL03709___pbp      1 ----------ATGAACAAAAAAATGAAAAAT--------GAAAAACGCAA     32

BSNT_03732___     48 GTCGCTTCCGATCCGGCTGAATATTTTAT---TTTTAGCTGCCTTTGTTA     94
                     .|||||.||.|||.||.||||.||.||.|   ||.|.|||   |||.|||
BL03709___pbp     33 ATCGCTCCCCATCAGGTTGAACATATTGTTCCTTCTCGCT---TTTATTA     79

BSNT_03732___     95 TATTCACC-TGGATTATTGTGGAACTGGGCATCAAGCAGATCGTGCAAGG    143
                     |.|||||| |.| |..|.|||...||.|||||...|||||||||....||
BL03709___pbp     80 TTTTCACCATCG-TCGTCGTGCGCCTCGGCATGGTGCAGATCGTCTTTGG    128

BSNT_03732___    144 CGATGATTACAAAAACCAAGCGAATAAGCAGGAACAAAGTGAAGTCAG--    191
                     |||.||.||.|..|||.|||.|.|.|||||||||      |||||| |  
BL03709___pbp    129 CGAAGACTATACGAACGAAGTGCAGAAGCAGGAA------GAAGTC-GAT    171

BSNT_03732___    192 --CTC----AGCGGTACCACGCGGGAAAATTTATGATCGAAACTTTAATG    235
                       |||    ||| ||.||.||.||||||||.|||||.||.|||||.|||.
BL03709___pbp    172 GTCTCGACAAGC-GTTCCGCGGGGGAAAATATATGACCGGAACTTGAATA    220

BSNT_03732___    236 CCATTGTGACAAATAAGGCTTTAAATGCAATCACATACAC---GAGATCT    282
                     |.||.||||.||||||..|..|.|||||.||.||||||||   ||.||| 
BL03709___pbp    221 CGATCGTGAAAAATAAACCGATGAATGCCATTACATACACAAGGACATC-    269

BSNT_03732___    283 AAATCGACCACGCA--AGAACAGCGCTTAAAGATCGCAAAAAAGCTGTCT    330
                       |||||||.|.||  ||.|||| |||.||| ||.||||||||.||..|.
BL03709___pbp    270 --ATCGACCTCTCAGGAGGACAG-GCTCAAA-ATAGCAAAAAAACTTGCA    315

BSNT_03732___    331 GACATGATCAAAGTCGATACAAAAAAAGTAACAGAACGGGATAAAAAAGA    380
                     ||.|||||||||.||||||||.|.|||.||||.||.||.||||||||.||
BL03709___pbp    316 GAAATGATCAAAATCGATACAGATAAAATAACGGAGCGCGATAAAAAGGA    365

BSNT_03732___    381 TTATTGGATTTTGACTAGACCGAAAGAAGCGAAAAAGCTCATTAGCTCT-    429
                     .||.||||||||.||..|.|||||||||||..|.||||||||.|.|..| 
BL03709___pbp    366 CTACTGGATTTTAACGCGCCCGAAAGAAGCCGAGAAGCTCATCACCGATG    415

BSNT_03732___    430 -----------AAAG--AAAGACAGCAGGTTGAAGACAAAAAAATATCCG    466
                                ||||  ||.|||.|||.|.|||||              |
BL03709___pbp    416 AGGACCGGAAAAAAGTCAAGGACGGCAAGCTGAAG--------------G    451

BSNT_03732___    467 ATGACGATTTATACCAGCTTCAGCTAAAACGGATTACTGATAAGCAGCTG    516
                     |.|||||||||||||||||.|||||..|..||||.||.||..|..|.|||
BL03709___pbp    452 AAGACGATTTATACCAGCTGCAGCTTGACAGGATCACGGAAGATAAACTG    501

BSNT_03732___    517 AATGAATTGACGGATAAAGATATGCAGATCCTCGCTATCAAAAGGCGT--    564
                     |||||||||||.|||.|||||.||.|..||.|.||.|||||   ||||  
BL03709___pbp    502 AATGAATTGACAGATCAAGATTTGAAAGTCTTGGCAATCAA---GCGTCA    548

BSNT_03732___    565 -ATGGATTCAGGCTATGCTTTGACCCCTCAATATATTAAAAATGAGGATG    613
                      ||||||||.||.||.||..||||.||.||.|||||||||||..|.|.||
BL03709___pbp    549 GATGGATTCTGGATACGCGCTGACTCCGCAGTATATTAAAAACAAAGGTG    598

BSNT_03732___    614 TATCAGCGAAGGAAATGGCAGTGGTAAGTGAACATTTAGACGAACTGCCA    663
                     ||.|.||.||.||||||||.||.||.||.|||||..|.|||||.||.||.
BL03709___pbp    599 TAACTGCAAAAGAAATGGCGGTTGTCAGCGAACACCTGGACGAGCTCCCG    648

BSNT_03732___    664 GGTGTTGATGTCACGTCCGATTGGGAACGTGAATATCCGTATAAAAACCT    713
                     ||.||.|||||.|||||.||||||.|.||.||.|||||.|||   |||..
BL03709___pbp    649 GGAGTCGATGTGACGTCTGATTGGAAGCGGGATTATCCTTAT---AACGG    695

BSNT_03732___    714 TCTTCGCTCAG-----TGCTCGGAAGTGTGTCCAGCTCTAATGAAGGATT    758
                     |||  ||||||     ||.||||.||..|.|||...||.||||||||..|
BL03709___pbp    696 TCT--GCTCAGAACGATGATCGGCAGCATATCCGATTCAAATGAAGGGCT    743

BSNT_03732___    759 GCCGTCCAACTTGCTCGACCATTATCTGTCGCTTGGCTACAGCCGAAATG    808
                     .|||...|.|.||||.||.||||||.|||||||.|||||||.|||.||||
BL03709___pbp    744 TCCGAAAAGCCTGCTTGATCATTATTTGTCGCTCGGCTACAACCGGAATG    793

BSNT_03732___    809 ACAGGGTCGGAAAAAGCTATCTGGAATACCAATATGAAAGCCTTCTGCAG    858
                     ||.|.||||||||||||||.||.|||..|.|||||||||...|.||.|||
BL03709___pbp    794 ACCGCGTCGGAAAAAGCTACCTCGAAGCCGAATATGAAAATGTGCTTCAG    843

BSNT_03732___    859 GGCCAAAAAGCAAAAGTCGAAAATATCACAGATTCAAA--AGGCAATGTC    906
                     ||.||.||||..|||||..|||||||.||..||  |||  |||..||.||
BL03709___pbp    844 GGACAGAAAGAGAAAGTGAAAAATATTACCAAT--AAATCAGGGGATATC    891

BSNT_03732___    907 ------ACGGGAA--CAAAAACGGTATCTGAAGGCAAAGCCGGGAAAGAT    948
                           || ||||  ||       |.||.||.||.|||..|||.||.|||
BL03709___pbp    892 GTCGATAC-GGAAGTCA-------TTTCCGAGGGGAAAAGCGGAAAGGAT    933

BSNT_03732___    949 CTTGTACTAACAATTGATATTGATTTGCAAAAATCAGTGGAAAAAATTAT    998
                     .|.||..|.||.||||||.|||||.||||||||.|..|.|||||||||.|
BL03709___pbp    934 TTAGTCTTGACGATTGATGTTGATATGCAAAAAGCGATTGAAAAAATTGT    983

BSNT_03732___    999 TGAGAAAAAACTTAAAGCTGCTAAAG-CAAGACCTAG---TACCGAATTG   1044
                     .|||.|..||||.||..||||.|||| |||| |.|||   | |||  .|.
BL03709___pbp    984 CGAGGATGAACTGAAGTCTGCCAAAGCCAAG-CATAGCGCT-CCG--CTT   1029

BSNT_03732___   1045 TTGGATCGTGCATTCGTTGTCATGATGGACCCTAGAAACGGCGAAGTGCT   1094
                     .|.||.||.||||||||.||.||||||||.||..|||||||.||||||.|
BL03709___pbp   1030 CTCGACCGCGCATTCGTCGTTATGATGGATCCGCGAAACGGGGAAGTGTT   1079

BSNT_03732___   1095 GACAATGGCAGGGAAGCAGATT--AAACGA-----GAAAATGGAGCCTAT   1137
                     ..|.||.||.||.||.|||.||  ||||||     |.||||      || 
BL03709___pbp   1080 ATCGATTGCCGGCAAACAGCTTAAAAACGAAAGCGGCAAAT------TA-   1122

BSNT_03732___   1138 AAGTTTGATGATTATGCATTAGGAGCCATGACTTCATCCTACGCTATGGG   1187
                     |||.||||.||.|||||..|.||.||.|||||.||.||.||.||.|||||
BL03709___pbp   1123 AAGGTTGACGACTATGCGCTCGGCGCGATGACGTCTTCTTATGCGATGGG   1172

BSNT_03732___   1188 ATCAGCTGTAAAAGGTGCAACCGTTTTGACCGGTCTTCAAACTGGAGCGA   1237
                     .||.|||||.|||||.||.||.|||||.||.|||||.||.||.|||||.|
BL03709___pbp   1173 CTCGGCTGTCAAAGGGGCCACTGTTTTAACAGGTCTGCAGACGGGAGCCA   1222

BSNT_03732___   1238 TTAATTTGAATAC----TGTATTTAAGGATGAACCATTGTATATCGGCCA   1283
                     |||||||.|||||    |.|.||    ||||||||..|.||||||||   
BL03709___pbp   1223 TTAATTTAAATACGACTTTTCTT----GATGAACCGCTCTATATCGG---   1265

BSNT_03732___   1284 GGATAAAAG----AGGGAAAAAATCTT-GGCAA--AACTTAGGGCCGGTT   1326
                         |||||    |..||||||||||| |||.|  |||||.||..|..|.
BL03709___pbp   1266 ----AAAAGGAAAACCGAAAAAATCTTGGGCGAGCAACTTGGGAACACTG   1311

BSNT_03732___   1327 GGTATTCAAACTGCATTAGAGAAGTCATCAAACGTTTTTATGTTTAAAAC   1376
                     |||||.||....||..|.||.|||||.||||||||.||.|||||||||||
BL03709___pbp   1312 GGTATCCAGGGAGCTCTTGAAAAGTCTTCAAACGTGTTCATGTTTAAAAC   1361

BSNT_03732___   1377 AGCTATTGCAGTTGGTAAAGGTGAATATAAACCTCACCAAGCATTGCCTT   1426
                     .||.||.||..||||||||||..|||||||..|.||.||      |||..
BL03709___pbp   1362 GGCGATCGCCCTTGGTAAAGGCCAATATAAGGCGCATCA------GCCGC   1405

BSNT_03732___   1427 TGGATACTTC-------TGCATTTGATACCTTCAGAAATTATTTCAGTCA   1469
                     |.|| .||||       .|||||||||||.|||||..||||||||||.||
BL03709___pbp   1406 TCGA-CCTTCAAACAAAAGCATTTGATACATTCAGGTATTATTTCAGCCA   1454

BSNT_03732___   1470 ATTTGGATTAGGAGTAAAAACAGGAATTGATCTACCAAATGAAATGACGG   1519
                     .||.||..|.||.||.|||||.|||||.|||||.|||||||||....|.|
BL03709___pbp   1455 GTTCGGCCTCGGCGTCAAAACCGGAATCGATCTGCCAAATGAAGCTTCAG   1504

BSNT_03732___   1520 GATATAAAGGTA---CAAGCAGATTATCTGGTTTCTTGCTTGATTTCGCC   1566
                     |.||.||||| |   |||  |||.|..|.||||||.|||||||.||..||
BL03709___pbp   1505 GCTACAAAGG-ATCTCAA--AGACTGCCCGGTTTCCTGCTTGACTTTTCC   1551

BSNT_03732___   1567 ATTGGACAGTATGATACTTATACACCGCTGGAATTGGCTCAATATGTCTC   1616
                     ||.|||||||||||.||.||.|||||||||.|..|||||||.||.||.||
BL03709___pbp   1552 ATCGGACAGTATGACACATACACACCGCTGCAGCTGGCTCAGTACGTGTC   1601

BSNT_03732___   1617 CACCATAGCAAATGGTGGCTACCGCATGAAGCCTCAGCTTGTAAAGGAAG   1666
                     .||.||.||.|||||.||.||||||||||||||.||||||||.||.||..
BL03709___pbp   1602 AACGATTGCCAATGGGGGATACCGCATGAAGCCGCAGCTTGTGAAAGAGA   1651

BSNT_03732___   1667 TCAGAGATTCAAATGCGAAAAAAGGGATCGGCGCAGTCGTT---GATTCT   1713
                     |||||||..|..||.||||||||||.|||||   ||.||||   .|.|||
BL03709___pbp   1652 TCAGAGAGCCCGATTCGAAAAAAGGAATCGG---AGCCGTTACACAGTCT   1698

BSNT_03732___   1714 GTTCAGCCTGAAGTATTGAATAAAGTCGATATGAAGAGTAGC------TA   1757
                     ||.|||||||||||||||||.|||||.||.|||      |||      ||
BL03709___pbp   1699 GTGCAGCCTGAAGTATTGAACAAAGTGGACATG------AGCGATGAATA   1742

BSNT_03732___   1758 TATTGAAGAGGTCCAAGCCGGTTTTAGACGGGT--TGCCACTAAAGGGAC   1805
                     |||..||||.|||||....||.||.||.||.||  ||  ||.|||||.||
BL03709___pbp   1743 TATAAAAGAAGTCCAGAAAGGATTCAGGCGCGTAATG--ACAAAAGGTAC   1790

BSNT_03732___   1806 AGCTGCAGGTCAACTGGCTTCAGCATCGTATAAACCAGCTGCAAAAACAG   1855
                     .||.||.||.||..|.||.||.||.||.|||||||||||||.||||||||
BL03709___pbp   1791 GGCAGCGGGACAGTTTGCCTCTGCTTCATATAAACCAGCTGGAAAAACAG   1840

BSNT_03732___   1856 GAACAGCCCAATCATTTTACGACGGACCGGATAAATCAAAAACAGGAACA   1905
                     ||||.|||||.||.||.||.|||||||||||.|||||.|||||.||||||
BL03709___pbp   1841 GAACGGCCCAGTCTTTCTATGACGGACCGGACAAATCGAAAACGGGAACA   1890

BSNT_03732___   1906 --GACACTTATAATACGACGCTTGTGGCTTATGCACCAGCTGACAATCCT   1953
                       ||||  ||.|||||.||||||||.||.||.|||||....||.|||||.
BL03709___pbp   1891 TCGACA--TACAATACAACGCTTGTTGCCTACGCACCTTACGATAATCCG   1938

BSNT_03732___   1954 GAGATTGCTATTTCTGTCGTAGTTCCTTGGACTTACATTGATTACAATCA   2003
                     ||..|.||||||||.|||||.|||||||||..|||.|.|||.||....||
BL03709___pbp   1939 GAAGTCGCTATTTCCGTCGTCGTTCCTTGGGTTTATAATGACTATGGCCA   1988

BSNT_03732___   2004 AAGATACTCAATTACAAACGAAATCGGCAGGGAAGTAATGGATAAATATT   2053
                     .|||||.||.||.|||||||||||||||.|..||||..|.|||||.||||
BL03709___pbp   1989 GAGATATTCGATCACAAACGAAATCGGCCGAAAAGTGCTTGATAAGTATT   2038

BSNT_03732___   2054 TTGAGCTGAAATCGAAGCAGGACAAAGAAGATACTCAGCAAAAGAATAAA   2103
                     ||||.||||||||.||.||....||||||.|||||....||||.||||||
BL03709___pbp   2039 TTGAACTGAAATCAAAACAATCAAAAGAAAATACTGTCGAAAAAAATAAA   2088

BSNT_03732___   2104 GACAAAATTG---AAGAAAATGCAGAAAACACAACGTCTTCTGATAACTA   2150
                     ||||||||.|   |||||..|.|||||.|.                    
BL03709___pbp   2089 GACAAAATCGAAAAAGAAGCTACAGAATAG--------------------   2118

BSNT_03732___   2151 A   2151
                      
BL03709___pbp   2118 -   2118


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