Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02352 and BL03652

See DNA alignment / Visit BSNT_02352 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence pep-align/BSNT_02352___ykuD.1.5803.seq
#    -bsequence pep-align/BL03652___ykuD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02352___ykuD-BL03652___ykuD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02352___ykuD-BL03652___ykuD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02352___ykuD
# 2: BL03652___ykuD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 168
# Identity:     122/168 (72.6%)
# Similarity:   142/168 (84.5%)
# Gaps:           4/168 ( 2.4%)
# Score: 640.0
# 
#
#=======================================

BSNT_02352___      1 MRKLLTYQVKQGDTLNSIAADFRISTAALLQANPSLQAG-LTAGQSIVIP     49
                        :|.||||.|:||.|||||||.:..|||||||.|..| ::|||||:||
BL03652___yku      1 ---MLMYQVKPGETLESIAADFRTTRQALLQANPGLNGGQVSAGQSIIIP     47

BSNT_02352___     50 GLPDPYTIPYHIAVSIGAKTLTLFLNNRVMKTYPIAVGKILTQTPTGEFY     99
                     |:.:|.||||.||||:..:||.|:..:|::|||||||||||||||.|||.
BL03652___yku     48 GIRNPDTIPYRIAVSLNGRTLRLYERDRLVKTYPIAVGKILTQTPRGEFV     97

BSNT_02352___    100 IINRQRNPGGPFGAYWLSLSKQHYGIHGTNNPASIGKAVSKGCIRMHNKD    149
                     |:|||.||||||||||||||||||||||||||:|||||||:|||||||:|
BL03652___yku     98 IVNRQPNPGGPFGAYWLSLSKQHYGIHGTNNPSSIGKAVSRGCIRMHNRD    147

BSNT_02352___    150 VIELASIVPNGTRVTINR    167
                     |:||||||||||||:|..
BL03652___yku    148 VLELASIVPNGTRVSITP    165


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