Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02352 and BL03652

See Amino acid alignment / Visit BSNT_02352 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_02352___ykuD.1.5803.seq
#    -bsequence dna-align/BL03652___ykuD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02352___ykuD-BL03652___ykuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02352___ykuD-BL03652___ykuD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02352___ykuD
# 2: BL03652___ykuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 536
# Identity:     356/536 (66.4%)
# Similarity:   356/536 (66.4%)
# Gaps:          70/536 (13.1%)
# Score: 1129.5
# 
#
#=======================================

BSNT_02352___      1 ATGAGGAAACTGCTTACGTACCAGGTGAAGCAAGGTGATACAC-TGAACA     49
                              .||||.|.||||||.||.||.|..||.||.||.| |||| |
BL03652___yku      1 ---------TTGCTGATGTACCAAGTCAAACCCGGAGAAACCCTTGAA-A     40

BSNT_02352___     50 GCATCGCGGCTGATTTCAGAATCAGCACGGC-TGCATTACTCCAGGCTAA     98
                     |||||||.||.|||||||||| |..|.|||| .||.||.||.|||||.||
BL03652___yku     41 GCATCGCCGCCGATTTCAGAA-CGACCCGGCAGGCGTTGCTGCAGGCGAA     89

BSNT_02352___     99 TCC-GTC----ACTGCAGGCAGGGCTCACCGCAGGACAGTCCATAGTCAT    143
                     ||| |.|    ||.||.|.||.|  |..||||.||.|||||.||..||||
BL03652___yku     90 TCCTGGCTTAAACGGCGGCCAAG--TGTCCGCGGGCCAGTCGATTATCAT    137

BSNT_02352___    144 CCCCGG-------ACTGCCGGACCCTTATACAATTCCGTATCATATCGCA    186
                     .|||||       |.| ||||||      ||||||||.||.|..||.||.
BL03652___yku    138 TCCCGGCATCAGAAAT-CCGGAC------ACAATTCCATACCGGATTGCC    180

BSNT_02352___    187 G----TCTCAATCGGAGCGAAGACCCTTACGC------TGTTCCTAAATA    226
                     |    |||||| ||    |||||     ||||      |||      ||.
BL03652___yku    181 GTGTCTCTCAA-CG----GAAGA-----ACGCTCAGATTGT------ATG    214

BSNT_02352___    227 ATCGGG------TAATGAAAACCTATCCCATCGCCGTTGGTAAAATACTA    270
                     |.||.|      |..|.|||||.|||||.||.|||||.||.|||||.||.
BL03652___yku    215 AGCGAGACAGACTTGTAAAAACATATCCGATTGCCGTCGGAAAAATCCTC    264

BSNT_02352___    271 ACGCAAACGCCTACTGGCGAGTTTTACATTATTAACCGCCAGCGCAATCC    320
                     ||.||.|||||.|..|||||.|||..|||..|.|||||.||||..|||||
BL03652___yku    265 ACACAGACGCCGAGAGGCGAATTTGTCATCGTCAACCGGCAGCCAAATCC    314

BSNT_02352___    321 CGGCGGCCCATTTGGCGCTTATTGGCTGAGCCTTTCAAAGCAGCACTACG    370
                     .||||||||.||.|||||.||.|||||||||||.|||||.||||||||||
BL03652___yku    315 GGGCGGCCCGTTCGGCGCCTACTGGCTGAGCCTGTCAAAACAGCACTACG    364

BSNT_02352___    371 GAATACATGGGACGAATAATCCCGCTTCGATTGGTAAGGCTGTTTCTAAA    420
                     |.||.|||||.||||||||.||..|.||.|||||.||.||||||||.|..
BL03652___yku    365 GCATCCATGGAACGAATAACCCTTCGTCAATTGGCAAAGCTGTTTCAAGG    414

BSNT_02352___    421 GGCTGCATTCGCATGCATAACAAAGACGTGATCGAACTTGCTTCAATTGT    470
                     ||.||.||.||||||||.||....||.||..|.|||||||||||.||.||
BL03652___yku    415 GGATGTATCCGCATGCACAATCGGGATGTTCTGGAACTTGCTTCTATCGT    464

BSNT_02352___    471 GCCAAACGGAACAAGAGTCACGATTA-ACCGGTAA-    504
                     .||.||||||||..||||..|.|||| |||  |.| 
BL03652___yku    465 ACCCAACGGAACCCGAGTGTCCATTACACC--TTAG    498


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