Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02339 and BL03646

See DNA alignment / Visit BSNT_02339 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence pep-align/BSNT_02339___ykwD.1.5803.seq
#    -bsequence pep-align/BL03646___ykwD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02339___ykwD-BL03646___ykwD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02339___ykwD-BL03646___ykwD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02339___ykwD
# 2: BL03646___ykwD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 261
# Identity:     142/261 (54.4%)
# Similarity:   174/261 (66.7%)
# Gaps:          42/261 (16.1%)
# Score: 634.0
# 
#
#=======================================

BSNT_02339___      1 MKKAFILSAAAAVGLFTFGGVQQASAKELSCQPVVTVKTGNTVQNMSLND     50
                     |||||:||||||..||||.|||.|.|||   |..|.||   ||.::::.|
BL03646___ykw      1 MKKAFLLSAAAAATLFTFSGVQHADAKE---QQQVQVK---TVHSINVTD     44

BSNT_02339___     51 AVKKLHINTNIKTLNAANEKEIKQFLQKHAKQSNVKVQDVQKTETAKPAQ    100
                     ...||:|. |:..|:.|::::|:..|..:.||:      .|:.:.:.|  
BL03646___ykw     45 LAGKLNIQ-NMNQLSKADQEKIQSLLHSYMKQA------TQQPKASAP--     85

BSNT_02339___    101 KTTEKAAADQNTASKAPATAEKTN----TTTSAPSSVSAYEKKVVELTNA    146
                         ||:|.:  |||..|:.|:|:    .|..|.||||||||:|||||||
BL03646___ykw     86 ----KASAPK--ASKPAASKEQTSQQKQNTAPASSSVSAYEKEVVELTNA    129

BSNT_02339___    147 ERQKQGLKPLQIDETLSKSARAKSQDMKDKNYFDHQSPTYGSPFDMMKSF    196
                     ||:|||||||.:||.|||.||.|||||||.|||||.||||||||||||.|
BL03646___ykw    130 ERKKQGLKPLTLDEKLSKVARTKSQDMKDNNYFDHNSPTYGSPFDMMKKF    179

BSNT_02339___    197 GISYKTAGENIAKGQKTPEEVVKAWMNSEGHRKNILNGSVI-LTV-----    240
                     ||:|:|||||||||||||:||||||||||||||||:|.:.. :.|     
BL03646___ykw    180 GITYRTAGENIAKGQKTPQEVVKAWMNSEGHRKNIMNPNFTHIGVGYVKD    229

BSNT_02339___    240 -----------    240
                                
BL03646___ykw    230 GNYWTQQFIGK    240


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