Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02339 and BL03646
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_02339___ykwD.1.5803.seq
# -bsequence dna-align/BL03646___ykwD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02339___ykwD-BL03646___ykwD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02339___ykwD-BL03646___ykwD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02339___ykwD
# 2: BL03646___ykwD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 818
# Identity: 499/818 (61.0%)
# Similarity: 499/818 (61.0%)
# Gaps: 190/818 (23.2%)
# Score: 1524.0
#
#
#=======================================
BSNT_02339___ 1 ATGAAGAAAGCATTTATTTTATCTGCTGCCGCTGCGGTTGGATTATTCAC 50
|||||.|||||.|||.|||||||.||.||.|||||.|......|.|||||
BL03646___ykw 1 ATGAAAAAAGCTTTTCTTTTATCAGCAGCAGCTGCAGCAACGCTCTTCAC 50
BSNT_02339___ 51 ATTCGGGGGCGTACAGCAAGCATCAGCGAAAGAACTCTCCTGC--CAGCC 98
||||.|.|||||.|||||.|||...||.||||| || ||||.
BL03646___ykw 51 ATTCAGCGGCGTTCAGCACGCAGACGCTAAAGA--------GCAGCAGCA 92
BSNT_02339___ 99 TGTGGTTAC-AGTAAAAACGGGGAACACAGTACAAAACATGTCACTTAAC 147
.| ||| |||.|||||.| ..||.|.||.|| ||||.|||
BL03646___ykw 93 AG----TACAAGTCAAAACCG----TTCATTCCATAA-ATGTAACT---- 129
BSNT_02339___ 148 GAT-------GCAGTGAAAAAACTGCATATTAACACAAATATCAA--AAC 188
||| || ||||||.|||| |..|||.||.|| |.|
BL03646___ykw 130 GATCTCGCGGGC-------AAACTGAATAT---CCAAAACATGAACCAGC 169
BSNT_02339___ 189 GT--TAAACGCTG--CAAACGAAAAAGAGATTAAGCAGT---TTCTTCAA 231
.| |||| |||| ||| |||||| ||| |||| |.|||
BL03646___ykw 170 TTTCTAAA-GCTGACCAA--GAAAAA---ATT---CAGTCCCTGCTT--- 207
BSNT_02339___ 232 AAACATGCGAAGCAATCTAACGTGAAAGTTCAGGATGTTCAA--AAGACA 279
||.|||.|..||||| ||| ||..|
BL03646___ykw 208 ------------CATTCTTATATGAAA------------CAAGCAACTC- 232
BSNT_02339___ 280 GAAACGGCCAAA----CCTGCACAAAAGACTACTG-----AAAAAGCAGC 320
|||.|||.|| .||||||..|||.||.||| |||
BL03646___ykw 233 --AACAGCCTAAAGCTTCTGCACCGAAGGCTTCTGCTCCTAAA------- 273
BSNT_02339___ 321 TGCTGATCAAAACACT---GCTTCTAAAGCACCCGCA-ACT--GCTGAAA 364
||| |||||.| || |||||.|||| .||| ||| .|.|.||
BL03646___ykw 274 -GCT--TCAAAGC-CTGCGGCTTCAAAAG----AGCAGACTTCACAGCAA 315
BSNT_02339___ 365 AAACAAACACA-ACAACATCTGCACCTTCATCTGTAAGTGCATACGAGAA 413
||.|||| | |||.|..|||||.||||.||||||||.||.||.||.||
BL03646___ykw 316 AAGCAAA---ATACAGCGCCTGCATCTTCTTCTGTAAGCGCGTATGAAAA 362
BSNT_02339___ 414 AAAAGTTGTTGAACTTACAAATGCAGAAAGACAAAAACAAGGATTAAAGC 463
|.|||||||||||||.||.||||||||||||.|.||||||||..||||.|
BL03646___ykw 363 AGAAGTTGTTGAACTGACGAATGCAGAAAGAAAGAAACAAGGGCTAAAAC 412
BSNT_02339___ 464 CGCTTCAAATT-GATGAAACGTTAAGCAAATCTGCACGAGCAAAATCTCA 512
|.||| |.||| |||||||.|.|.|||||...|||.||..|.||||||||
BL03646___ykw 413 CTCTT-ACATTGGATGAAAAGCTGAGCAAGGTTGCCCGCACGAAATCTCA 461
BSNT_02339___ 513 GGATATGAAGGACAAAAACTACTTTGATCACCAAAGCCCAACATACGGCT 562
.||||||||.||.||.|||||.|||||||||.|.|||||.||.|||||.|
BL03646___ykw 462 AGATATGAAAGATAACAACTATTTTGATCACAACAGCCCGACTTACGGTT 511
BSNT_02339___ 563 CACCGTTTGATATGATGAAATCTTTCGGAATCAGCTACAAAACAGCAGGT 612
|.||.|||||.||||||||....|||||.||||..|||...||.||.||.
BL03646___ykw 512 CTCCATTTGACATGATGAAGAAATTCGGCATCACATACCGCACTGCCGGA 561
BSNT_02339___ 613 GAAAACATTGCGAAGGGCCAAAAGACACCAGAAGAAGTAGTAAAAGCTTG 662
||||||||.||.||.||||||||.||.||..|||||||.||.||||||||
BL03646___ykw 562 GAAAACATCGCAAAAGGCCAAAAAACGCCTCAAGAAGTCGTCAAAGCTTG 611
BSNT_02339___ 663 GATGAACAGTGAAGGACACAGAAAAAACATT-------CTAA----ACG- 700
|||||||||||||||.||||||||||||||| |||| |||
BL03646___ykw 612 GATGAACAGTGAAGGCCACAGAAAAAACATTATGAATCCTAACTTCACGC 661
BSNT_02339___ 701 -----GGAGTGTAATATTAACTGTGTAA---------------------- 723
||.||...||| |||| ||
BL03646___ykw 662 ATATCGGTGTCGGATA-----TGTG-AAGGACGGCAACTACTGGACTCAG 705
BSNT_02339___ 723 ------------------ 723
BL03646___ykw 706 CAGTTCATCGGAAAATAA 723
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