Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02251 and BL03626
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence pep-align/BSNT_02251___ligD.1.5803.seq
# -bsequence pep-align/BL03626___ligD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02251___ligD-BL03626___ligD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02251___ligD-BL03626___ligD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02251___ligD
# 2: BL03626___ligD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity: 325/616 (52.8%)
# Similarity: 422/616 (68.5%)
# Gaps: 51/616 ( 8.3%)
# Score: 1773.0
#
#
#=======================================
BSNT_02251___ 1 -----------------------------------------------MEL 3
..|
BL03626___lig 1 MGITMQPVLTTSAPSGGNWRYEVKYDGYRGLLKIAATGEVSLISRNSQPL 50
BSNT_02251___ 4 SSTFPEITQFAKTAFQHLEKELPLTLDGEIVCLVNPCRADFEHLQVRGRL 53
.:|||||::|||:..:.|::.||:|:|||||.|.|..|:.||::|.||..
BL03626___lig 51 ENTFPEISEFAKSMIETLKEHLPITIDGEIVSLTNRFRSRFEYVQKRGLS 100
BSNT_02251___ 54 KRPDKIQESANARPCCFLAFDLLERSGEDVTLLSYLDRKKSLRELISAAK 103
|:.:.|.::|..:||.:||||||..:||.:|.|.|.:||:.|.:|:....
BL03626___lig 101 KKAELIAQAAAKKPCQYLAFDLLVFNGESLTSLPYTERKRMLFDLMKELG 150
BSNT_02251___ 104 LPASPDPYAKETIQSIPCYDHFDQLWEMVIKYDGEGIVAKKTNSKWLEKK 153
||.:|||.|...||.||....|..||:.|.::|||||||||.:|:|.|.|
BL03626___lig 151 LPMAPDPMAHARIQYIPDTSDFHDLWKAVKRFDGEGIVAKKKDSRWAENK 200
BSNT_02251___ 154 RSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGIMTPIASVSHGMRD 203
::::|||.||:|:|.|.:||:|..|.:||::|...|.:..:.|||||:.:
BL03626___lig 201 KTAEWLKLKNYKKAAVFMTGYNMANRYLTIAVYDRGQIKEVGSVSHGLGE 250
BSNT_02251___ 204 EEKSAIREIMEQHGHQTPSGEFKLEPSICAAVQYLTILHGTLREVSFIGF 253
:|::||..|::|:|.:|..||:.::||||..|.||||.:||||||||:.|
BL03626___lig 251 QERNAILSIVKQYGTETKPGEYTIDPSICMTVHYLTIHYGTLREVSFVSF 300
BSNT_02251___ 254 EFQMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQYMI 303
||.|.|..|||.:::.||:.|||.||.|||||:||.|:.|||.|:|.|:.
BL03626___lig 301 EFDMAWENCTYNRLLLHSRNVHPDLQLTSLDKVIFPKSDKTKADYIGYLN 350
BSNT_02251___ 304 EVSDYLLPFLKNRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSH 353
|:.|:|||||.|||:|||||||||..|||||||||||||:|:.|..|..|
BL03626___lig 351 EIGDFLLPFLDNRALTVIRYPHGSGGESFFQKNKPDYAPEFITSIRDDEH 400
BSNT_02251___ 354 EHIVCEDMSTLLWLCNQLALEFHVPFQTIKSRRPAEIVIDLDPPSRDDFL 403
|||:|.|.|.||||.||||||||:||||:.:..|.|||.||||||:.:|.
BL03626___lig 401 EHIICSDYSVLLWLANQLALEFHIPFQTVDTAHPTEIVFDLDPPSKSEFP 450
BSNT_02251___ 404 MAVQAANELKRLLDSFGITSYPKLSGNKGIQLYIPLSPEAFTYEETRQFT 453
:||:||.||.||.|..|:.|:||||||||||:|||:|..||||||||.||
BL03626___lig 451 LAVRAAKELHRLFDQLGLLSFPKLSGNKGIQIYIPISKNAFTYEETRLFT 500
BSNT_02251___ 454 QLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTIICPYSTRGN 503
...|.||.:.||:|||||||||||.||||:||:|||.|||||||||||||
BL03626___lig 501 SFAASYCVSLFPDLFTTERLIKNRGGKLYIDYVQHAPGKTIICPYSTRGN 550
BSNT_02251___ 504 ELGTVAAPLYWHEVQSSLTPALFTIDTVIDRIKKQGCPFFDFYRNPQDEP 553
|||||||||:|.||.|.|:|..||::.|:.|.|:.||||..|:|.|||:.
BL03626___lig 551 ELGTVAAPLFWDEVHSDLSPLNFTMEAVVKRTKELGCPFESFFRQPQDKQ 600
BSNT_02251___ 554 LSAILHQLKKKS---- 565
:.|||..||:.:
BL03626___lig 601 IKAILDHLKENNRSEN 616
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