Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02251 and BL03626

See DNA alignment / Visit BSNT_02251 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:46
# Commandline: needle
#    -asequence pep-align/BSNT_02251___ligD.1.5803.seq
#    -bsequence pep-align/BL03626___ligD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02251___ligD-BL03626___ligD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02251___ligD-BL03626___ligD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02251___ligD
# 2: BL03626___ligD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity:     325/616 (52.8%)
# Similarity:   422/616 (68.5%)
# Gaps:          51/616 ( 8.3%)
# Score: 1773.0
# 
#
#=======================================

BSNT_02251___      1 -----------------------------------------------MEL      3
                                                                    ..|
BL03626___lig      1 MGITMQPVLTTSAPSGGNWRYEVKYDGYRGLLKIAATGEVSLISRNSQPL     50

BSNT_02251___      4 SSTFPEITQFAKTAFQHLEKELPLTLDGEIVCLVNPCRADFEHLQVRGRL     53
                     .:|||||::|||:..:.|::.||:|:|||||.|.|..|:.||::|.||..
BL03626___lig     51 ENTFPEISEFAKSMIETLKEHLPITIDGEIVSLTNRFRSRFEYVQKRGLS    100

BSNT_02251___     54 KRPDKIQESANARPCCFLAFDLLERSGEDVTLLSYLDRKKSLRELISAAK    103
                     |:.:.|.::|..:||.:||||||..:||.:|.|.|.:||:.|.:|:....
BL03626___lig    101 KKAELIAQAAAKKPCQYLAFDLLVFNGESLTSLPYTERKRMLFDLMKELG    150

BSNT_02251___    104 LPASPDPYAKETIQSIPCYDHFDQLWEMVIKYDGEGIVAKKTNSKWLEKK    153
                     ||.:|||.|...||.||....|..||:.|.::|||||||||.:|:|.|.|
BL03626___lig    151 LPMAPDPMAHARIQYIPDTSDFHDLWKAVKRFDGEGIVAKKKDSRWAENK    200

BSNT_02251___    154 RSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGIMTPIASVSHGMRD    203
                     ::::|||.||:|:|.|.:||:|..|.:||::|...|.:..:.|||||:.:
BL03626___lig    201 KTAEWLKLKNYKKAAVFMTGYNMANRYLTIAVYDRGQIKEVGSVSHGLGE    250

BSNT_02251___    204 EEKSAIREIMEQHGHQTPSGEFKLEPSICAAVQYLTILHGTLREVSFIGF    253
                     :|::||..|::|:|.:|..||:.::||||..|.||||.:||||||||:.|
BL03626___lig    251 QERNAILSIVKQYGTETKPGEYTIDPSICMTVHYLTIHYGTLREVSFVSF    300

BSNT_02251___    254 EFQMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQYMI    303
                     ||.|.|..|||.:::.||:.|||.||.|||||:||.|:.|||.|:|.|:.
BL03626___lig    301 EFDMAWENCTYNRLLLHSRNVHPDLQLTSLDKVIFPKSDKTKADYIGYLN    350

BSNT_02251___    304 EVSDYLLPFLKNRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSH    353
                     |:.|:|||||.|||:|||||||||..|||||||||||||:|:.|..|..|
BL03626___lig    351 EIGDFLLPFLDNRALTVIRYPHGSGGESFFQKNKPDYAPEFITSIRDDEH    400

BSNT_02251___    354 EHIVCEDMSTLLWLCNQLALEFHVPFQTIKSRRPAEIVIDLDPPSRDDFL    403
                     |||:|.|.|.||||.||||||||:||||:.:..|.|||.||||||:.:|.
BL03626___lig    401 EHIICSDYSVLLWLANQLALEFHIPFQTVDTAHPTEIVFDLDPPSKSEFP    450

BSNT_02251___    404 MAVQAANELKRLLDSFGITSYPKLSGNKGIQLYIPLSPEAFTYEETRQFT    453
                     :||:||.||.||.|..|:.|:||||||||||:|||:|..||||||||.||
BL03626___lig    451 LAVRAAKELHRLFDQLGLLSFPKLSGNKGIQIYIPISKNAFTYEETRLFT    500

BSNT_02251___    454 QLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTIICPYSTRGN    503
                     ...|.||.:.||:|||||||||||.||||:||:|||.|||||||||||||
BL03626___lig    501 SFAASYCVSLFPDLFTTERLIKNRGGKLYIDYVQHAPGKTIICPYSTRGN    550

BSNT_02251___    504 ELGTVAAPLYWHEVQSSLTPALFTIDTVIDRIKKQGCPFFDFYRNPQDEP    553
                     |||||||||:|.||.|.|:|..||::.|:.|.|:.||||..|:|.|||:.
BL03626___lig    551 ELGTVAAPLFWDEVHSDLSPLNFTMEAVVKRTKELGCPFESFFRQPQDKQ    600

BSNT_02251___    554 LSAILHQLKKKS----    565
                     :.|||..||:.:    
BL03626___lig    601 IKAILDHLKENNRSEN    616


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