Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02251 and BL03626

See Amino acid alignment / Visit BSNT_02251 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:46
# Commandline: needle
#    -asequence dna-align/BSNT_02251___ligD.1.5803.seq
#    -bsequence dna-align/BL03626___ligD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02251___ligD-BL03626___ligD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02251___ligD-BL03626___ligD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02251___ligD
# 2: BL03626___ligD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2011
# Identity:    1147/2011 (57.0%)
# Similarity:  1147/2011 (57.0%)
# Gaps:         473/2011 (23.5%)
# Score: 3043.0
# 
#
#=======================================

BSNT_02251___      0 --------------------------------------------------      0
                                                                       
BL03626___lig      1 ATGGGAATTACGATGCAGCCTGTATTGACTACATCAGCTCCCTCAGGCGG     50

BSNT_02251___      0 --------------------------------------------------      0
                                                                       
BL03626___lig     51 CAATTGGCGGTATGAAGTCAAATATGACGGGTATCGGGGTCTTTTAAAGA    100

BSNT_02251___      1 -----------------GTGGAGCTCAGCAG-------------------     14
                                      ||...|||||.|||                   
BL03626___lig    101 TTGCTGCGACCGGCGAAGTTTCGCTCATCAGCAGAAACTCACAGCCGCTC    150

BSNT_02251___     15 -----CACCTTCCCTGAAATCACACAATTCGCCAAAACTGC---------     50
                          |||.||.||.|||||..|..||||.||.||||  ||         
BL03626___lig    151 GAAAACACATTTCCGGAAATTTCGGAATTTGCAAAAA--GCATGATCGAA    198

BSNT_02251___     51 -CTTTCAGCACCTAGAAAAAGAGCTT-CCGCTGACACTTGACGGTGAAAT     98
                      ||.|||        ||.||.| ||| |||.|.||..|||||||.|||||
BL03626___lig    199 ACTCTCA--------AAGAACA-CTTGCCGATCACGATTGACGGGGAAAT    239

BSNT_02251___     99 CGTATGTTTGGTGAATCCCTGTCG-TGCAGATTTTGAACACCTTCAAGTG    147
                     .||.|..|||...||.|..|.||| |.|.|| ||||||.|..|.|||...
BL03626___lig    240 TGTGTCGTTGACAAACCGTTTTCGTTCCCGA-TTTGAATATGTCCAAAAA    288

BSNT_02251___    148 CGGGGGCGTTTG----AAAAGGCCAGACAAGATT---CAGGAATCGGCAA    190
                     .|||   |||||    |||||||| ||...||||   ||.|.|.|.||||
BL03626___lig    289 AGGG---GTTTGAGCAAAAAGGCC-GAGTTGATTGCACAAGCAGCCGCAA    334

BSNT_02251___    191 ACGCGCGGCCGTGC---TGCTTTCTCGCCTTTGATTT----GTT----AG    229
                     |   |...||||||   |.||   |.||.||||||||    |||    | 
BL03626___lig    335 A---GAAACCGTGCCAGTACT---TGGCTTTTGATTTACTGGTTTTTAA-    377

BSNT_02251___    230 AGCGAAGCGGAGAAGATGTAA---CGCTTCTTTCGTATTTGGACCGCAAA    276
                            |||||||..|.|||   ||||.|   |.|||    ||||.|..
BL03626___lig    378 -------CGGAGAAAGTTTAACCTCGCTCC---CCTAT----ACCGAACG    413

BSNT_02251___    277 AAATCGC-TGCGT---GAACTCATATCCGCAGCAA-AGCT--TCCTGC--    317
                     |||.||| |||.|   ||.||.||       |.|| ||||  .|||||  
BL03626___lig    414 AAAACGCATGCTTTTCGACCTGAT-------GAAAGAGCTCGGCCTGCCG    456

BSNT_02251___    318 AT--CTCCAGATC------CTTACGCAAAAGAAACCATTCAATCCATTCC    359
                     ||  ||||.||||      ||.||||...|      |||||||.|| |||
BL03626___lig    457 ATGGCTCCCGATCCGATGGCTCACGCTCGA------ATTCAATACA-TCC    499

BSNT_02251___    360 CTG----TTATGATCATTTTGATCAACTCTGGGAGATGGTAATAAAA--T    403
                     |||    ||.||   ||||..|..|.||.|||.||  |.|..|||||  |
BL03626___lig    500 CTGACACTTCTG---ATTTCCACGACCTTTGGAAG--GCTGTTAAAAGGT    544

BSNT_02251___    404 ATGACGGAGAAGGAATTGTAGCGAAGAAAACAAACAGCAAATGGCTTGA-    452
                     .||||||.||.||||||||.||||||||||.|.|||||...|||..||| 
BL03626___lig    545 TTGACGGCGAGGGAATTGTCGCGAAGAAAAAAGACAGCCGCTGGGCTGAA    594

BSNT_02251___    453 ---AAAGAAGCGGTCGTCCGATTGGCTCAAATATAAAAACTTTAAACAAG    499
                        |||.||.|||    ||||.|||||||||...|||||||..|||.|||
BL03626___lig    595 AATAAAAAAACGG----CCGAATGGCTCAAACTCAAAAACTACAAAAAAG    640

BSNT_02251___    500 CTTATGTTTGCATAACAGGGTTCAACCCTAA----CAACGGGTTTCTGAC    545
                     ||..|||.|..||.|||||.|.||||    |    .|||.|.|.|.||||
BL03626___lig    641 CTGCTGTATTTATGACAGGCTACAAC----ATGGCAAACCGTTATTTGAC    686

BSNT_02251___    546 GGTATCG--GTGTTAAAAAACGGAATAATGACACCGATTGCC--------    585
                       .||||  ||.|              |||||..||   |||        
BL03626___lig    687 --AATCGCCGTCT--------------ATGACCGCG---GCCAAATCAAG    717

BSNT_02251___    586 ---------TCTGTCTCGCACGGAATGCGCGATGAGGAAAAAAGCGCTAT    626
                              ||.||.||.||||||.|..|.||..||||||.||.|||.||
BL03626___lig    718 GAAGTCGGTTCGGTTTCCCACGGACTCGGAGAACAGGAAAGAAACGCCAT    767

BSNT_02251___    627 ACGCGAGATTATGGAAC----AGC---ACGGA----CATCAAACACCCTC    665
                     .|       |.|.||.|    |||   |||||    .|.|||| ||||  
BL03626___lig    768 TC-------TTTCGATCGTCAAGCAATACGGAACCGAAACAAA-ACCC--    807

BSNT_02251___    666 AGGCGAGTTTAAGCTTGAACCTTCGATTTGTGCA--GCTGTTCAATACTT    713
                      ||.||.|.||...||||.||.||||||  ||||  .|.||.||.|||||
BL03626___lig    808 -GGTGAATATACCATTGATCCGTCGATT--TGCATGACGGTCCATTACTT    854

BSNT_02251___    714 AACAATTCTCCATGGCACATTAAGAGAGGTATCGTTTATCGGTTTC----    759
                     |||.||||...|.||.|||||..|.|||||.||||||    |||||    
BL03626___lig    855 AACGATTCATTACGGGACATTGCGCGAGGTGTCGTTT----GTTTCATTT    900

BSNT_02251___    760 GAATTCCAAATGGACTGGACCGAA---TGCACGTA--------TGC-GCA    797
                     |||||..|.||||..|||   |||   |||||.||        ||| || 
BL03626___lig    901 GAATTTGACATGGCATGG---GAAAATTGCACTTACAACCGCCTGCTGC-    946

BSNT_02251___    798 AGTCAT--ACGACAC-TCCAAACCGGTTCACCCAAAGCTCCAGTTCACAA    844
                      .||||  |.||.|| ||||..|||.||          |.|||.|.||||
BL03626___lig    947 -TTCATTCAAGAAACGTCCATCCCGATT----------TGCAGCTGACAA    985

BSNT_02251___    845 GCCTGGATAAAATCATATTT--GAAAAG-AATAAAAAAACAAAAGAAGAT    891
                     ||||.||||||.||||.|||  .||||| .||   ||||||||||..|||
BL03626___lig    986 GCCTTGATAAAGTCATCTTTCCTAAAAGCGAT---AAAACAAAAGCGGAT   1032

BSNT_02251___    892 TTTATTCAGTATA--TGATTGAAGTCAGTGACTACCTGCTCCCATTTCTG    939
                     |..||  .|.|||  |.|.||||.||.|.||.|..|||||.||.|||||.
BL03626___lig   1033 TACAT--CGGATACCTTAATGAAATCGGCGATTTTCTGCTTCCGTTTCTC   1080

BSNT_02251___    940 AAAAACCGGGCTGTCACCGTCATCCGCTATCCGCATGGATCTAGGAGCGA    989
                     .|.||.|||||..|.|||||.|||||.||||||||.||.||..|..|.||
BL03626___lig   1081 GACAATCGGGCGCTTACCGTTATCCGTTATCCGCACGGTTCCGGCGGAGA   1130

BSNT_02251___    990 ATCATTTTTCCAAAAAAACAAACCGGACTATGCGCCGGATTTT-----GT   1034
                     .||.|||||.|||||||||||.||.|||||.||.||.||.|||     ||
BL03626___lig   1131 GTCTTTTTTTCAAAAAAACAAGCCCGACTACGCACCCGAATTTATCACGT   1180

BSNT_02251___   1035 TCAATCTTTC--TATGATGGAAGCCATGAACATATTGTCTGTGAG-GA-T   1080
                     .||    |||  .||||.|  || ||.||.|||||..|||| .|| || |
BL03626___lig   1181 CCA----TTCGGGATGACG--AG-CACGAGCATATCATCTG-CAGCGATT   1222

BSNT_02251___   1081 ATGTC--TACATTGCTATGGCTTTGCAACCAGCTTGCTTTGGAGTTTCAC   1128
                     || ||  |.|  ||||.||||||..|||.||||||||.||||||||.||.
BL03626___lig   1223 AT-TCGGTTC--TGCTGTGGCTTGCCAATCAGCTTGCGTTGGAGTTCCAT   1269

BSNT_02251___   1129 GTTCCTTTTCAAACCATTAAAA--GCAGGCGTCCGGCTGAGATTGTCATT   1176
                     .|.|||||||||||..|..|.|  ||  .|.||||.|.||.||.||..|.
BL03626___lig   1270 ATCCCTTTTCAAACGGTGGATACGGC--CCATCCGACCGAAATCGTTTTC   1317

BSNT_02251___   1177 GATTTAGACCCGCCTTC----GCGAGATGACTTTCTTATGGCCGTGCAG-   1221
                     |||.|.||.||||||||    .||    ||.||||...||||||| ||| 
BL03626___lig   1318 GATCTTGATCCGCCTTCAAAGTCG----GAGTTTCCGCTGGCCGT-CAGA   1362

BSNT_02251___   1222 GCCGCAAATGAACTGAAGCGGCTGTTGGAT----TCCTTTGGCATCACAT   1267
                     |||||.||.||.|||.|.||..|.||.|||    ||    |||.||..||
BL03626___lig   1363 GCCGCGAAAGAGCTGCACCGTTTATTTGATCAGCTC----GGCCTCTTAT   1408

BSNT_02251___   1268 CGTACCCGAAGCTGTCCGGCAACAAAGGCATCCAGCTTTATATTCCCTTG   1317
                     |.|..||.||||||||.||.||.|||||.||.||..|.||||||||..|.
BL03626___lig   1409 CTTTTCCAAAGCTGTCGGGAAATAAAGGGATACAAATCTATATTCCGATT   1458

BSNT_02251___   1318 TCTCCCGAGGCATTTACGTATGAAGAAACACGCCAATTTAC-------GC   1360
                     ||.....|.||.|||||.|||||||||||.||||..||.||       ||
BL03626___lig   1459 TCAAAAAACGCCTTTACTTATGAAGAAACCCGCCTTTTCACAAGCTTTGC   1508

BSNT_02251___   1361 AGCTGATCGCAGAGTACTGCACCAAT-GC-ATTTCCCGAGCTCTTTACCA   1408
                     .|||..|       ||.|||..|  | || .||||||||.||.||.||.|
BL03626___lig   1509 GGCTTCT-------TATTGCGTC--TCGCTTTTTCCCGATCTGTTCACAA   1549

BSNT_02251___   1409 CTGAACGCTTGATTAAAAACAGACACGGCAAATTGTATCTTGATTATTTG   1458
                     |.||||||.||||.||||||||...|||.||..|.|||.||||.|||.||
BL03626___lig   1550 CCGAACGCCTGATCAAAAACAGGGGCGGAAAGCTCTATATTGACTATGTG   1599

BSNT_02251___   1459 CAGCATGCAGAAGGAAAAACGATTATCTGTCCCTATTCGACGAGAGGAAA   1508
                     ||||||||....|||||||||||.|||||.||.|||||.||.|||||.||
BL03626___lig   1600 CAGCATGCCCCGGGAAAAACGATCATCTGCCCGTATTCCACAAGAGGCAA   1649

BSNT_02251___   1509 TGAGCTTGGGACTGTTGCAGCCCCGCTCTACTGGCATGAGGTGCAATCAT   1558
                     |||||||||.||.||.||.||.|||||.|..|||.||||.||.||.|||.
BL03626___lig   1650 TGAGCTTGGCACAGTGGCCGCACCGCTGTTTTGGGATGAAGTCCATTCAG   1699

BSNT_02251___   1559 CTTTAACACCCGCTCT----GTTTACAATTGATACGGTCATCGATCGAAT   1604
                     ..||..||||    ||    .|||||.||.||..|.|||.||.|.||.|.
BL03626___lig   1700 ACTTGTCACC----CTTAAATTTTACGATGGAGGCTGTCGTCAAACGCAC   1745

BSNT_02251___   1605 TAAGAAGCAGGGCTGCCCATTTTTTGA----TTTTTACCG-CAACCCGCA   1649
                     .|||.|.|..||.|||||   |||.||    ||.|| |.| ||.||| ||
BL03626___lig   1746 AAAGGAACTCGGATGCCC---TTTCGAAAGCTTCTT-CAGACAGCCC-CA   1790

BSNT_02251___   1650 AGACGAACCGCTTAGCGCCATATTGCATCAGTT-GAAGAAAA--------   1690
                     .|||.|||.|.|.|..||.||..|..||||.|| .|||||||        
BL03626___lig   1791 GGACAAACAGATCAAAGCTATTCTCGATCACTTAAAAGAAAACAACCGTT   1840

BSNT_02251___   1691 ---AGAGCTGA   1698
                        |.|.||||
BL03626___lig   1841 CGGAAAACTGA   1851


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