Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02251 and BL03626
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02251___ligD.1.5803.seq
# -bsequence dna-align/BL03626___ligD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02251___ligD-BL03626___ligD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02251___ligD-BL03626___ligD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02251___ligD
# 2: BL03626___ligD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2011
# Identity: 1147/2011 (57.0%)
# Similarity: 1147/2011 (57.0%)
# Gaps: 473/2011 (23.5%)
# Score: 3043.0
#
#
#=======================================
BSNT_02251___ 0 -------------------------------------------------- 0
BL03626___lig 1 ATGGGAATTACGATGCAGCCTGTATTGACTACATCAGCTCCCTCAGGCGG 50
BSNT_02251___ 0 -------------------------------------------------- 0
BL03626___lig 51 CAATTGGCGGTATGAAGTCAAATATGACGGGTATCGGGGTCTTTTAAAGA 100
BSNT_02251___ 1 -----------------GTGGAGCTCAGCAG------------------- 14
||...|||||.|||
BL03626___lig 101 TTGCTGCGACCGGCGAAGTTTCGCTCATCAGCAGAAACTCACAGCCGCTC 150
BSNT_02251___ 15 -----CACCTTCCCTGAAATCACACAATTCGCCAAAACTGC--------- 50
|||.||.||.|||||..|..||||.||.|||| ||
BL03626___lig 151 GAAAACACATTTCCGGAAATTTCGGAATTTGCAAAAA--GCATGATCGAA 198
BSNT_02251___ 51 -CTTTCAGCACCTAGAAAAAGAGCTT-CCGCTGACACTTGACGGTGAAAT 98
||.||| ||.||.| ||| |||.|.||..|||||||.|||||
BL03626___lig 199 ACTCTCA--------AAGAACA-CTTGCCGATCACGATTGACGGGGAAAT 239
BSNT_02251___ 99 CGTATGTTTGGTGAATCCCTGTCG-TGCAGATTTTGAACACCTTCAAGTG 147
.||.|..|||...||.|..|.||| |.|.|| ||||||.|..|.|||...
BL03626___lig 240 TGTGTCGTTGACAAACCGTTTTCGTTCCCGA-TTTGAATATGTCCAAAAA 288
BSNT_02251___ 148 CGGGGGCGTTTG----AAAAGGCCAGACAAGATT---CAGGAATCGGCAA 190
.||| ||||| |||||||| ||...|||| ||.|.|.|.||||
BL03626___lig 289 AGGG---GTTTGAGCAAAAAGGCC-GAGTTGATTGCACAAGCAGCCGCAA 334
BSNT_02251___ 191 ACGCGCGGCCGTGC---TGCTTTCTCGCCTTTGATTT----GTT----AG 229
| |...|||||| |.|| |.||.|||||||| ||| |
BL03626___lig 335 A---GAAACCGTGCCAGTACT---TGGCTTTTGATTTACTGGTTTTTAA- 377
BSNT_02251___ 230 AGCGAAGCGGAGAAGATGTAA---CGCTTCTTTCGTATTTGGACCGCAAA 276
|||||||..|.||| ||||.| |.||| ||||.|..
BL03626___lig 378 -------CGGAGAAAGTTTAACCTCGCTCC---CCTAT----ACCGAACG 413
BSNT_02251___ 277 AAATCGC-TGCGT---GAACTCATATCCGCAGCAA-AGCT--TCCTGC-- 317
|||.||| |||.| ||.||.|| |.|| |||| .|||||
BL03626___lig 414 AAAACGCATGCTTTTCGACCTGAT-------GAAAGAGCTCGGCCTGCCG 456
BSNT_02251___ 318 AT--CTCCAGATC------CTTACGCAAAAGAAACCATTCAATCCATTCC 359
|| ||||.|||| ||.||||...| |||||||.|| |||
BL03626___lig 457 ATGGCTCCCGATCCGATGGCTCACGCTCGA------ATTCAATACA-TCC 499
BSNT_02251___ 360 CTG----TTATGATCATTTTGATCAACTCTGGGAGATGGTAATAAAA--T 403
||| ||.|| ||||..|..|.||.|||.|| |.|..||||| |
BL03626___lig 500 CTGACACTTCTG---ATTTCCACGACCTTTGGAAG--GCTGTTAAAAGGT 544
BSNT_02251___ 404 ATGACGGAGAAGGAATTGTAGCGAAGAAAACAAACAGCAAATGGCTTGA- 452
.||||||.||.||||||||.||||||||||.|.|||||...|||..|||
BL03626___lig 545 TTGACGGCGAGGGAATTGTCGCGAAGAAAAAAGACAGCCGCTGGGCTGAA 594
BSNT_02251___ 453 ---AAAGAAGCGGTCGTCCGATTGGCTCAAATATAAAAACTTTAAACAAG 499
|||.||.||| ||||.|||||||||...|||||||..|||.|||
BL03626___lig 595 AATAAAAAAACGG----CCGAATGGCTCAAACTCAAAAACTACAAAAAAG 640
BSNT_02251___ 500 CTTATGTTTGCATAACAGGGTTCAACCCTAA----CAACGGGTTTCTGAC 545
||..|||.|..||.|||||.|.|||| | .|||.|.|.|.||||
BL03626___lig 641 CTGCTGTATTTATGACAGGCTACAAC----ATGGCAAACCGTTATTTGAC 686
BSNT_02251___ 546 GGTATCG--GTGTTAAAAAACGGAATAATGACACCGATTGCC-------- 585
.|||| ||.| |||||..|| |||
BL03626___lig 687 --AATCGCCGTCT--------------ATGACCGCG---GCCAAATCAAG 717
BSNT_02251___ 586 ---------TCTGTCTCGCACGGAATGCGCGATGAGGAAAAAAGCGCTAT 626
||.||.||.||||||.|..|.||..||||||.||.|||.||
BL03626___lig 718 GAAGTCGGTTCGGTTTCCCACGGACTCGGAGAACAGGAAAGAAACGCCAT 767
BSNT_02251___ 627 ACGCGAGATTATGGAAC----AGC---ACGGA----CATCAAACACCCTC 665
.| |.|.||.| ||| ||||| .|.|||| ||||
BL03626___lig 768 TC-------TTTCGATCGTCAAGCAATACGGAACCGAAACAAA-ACCC-- 807
BSNT_02251___ 666 AGGCGAGTTTAAGCTTGAACCTTCGATTTGTGCA--GCTGTTCAATACTT 713
||.||.|.||...||||.||.|||||| |||| .|.||.||.|||||
BL03626___lig 808 -GGTGAATATACCATTGATCCGTCGATT--TGCATGACGGTCCATTACTT 854
BSNT_02251___ 714 AACAATTCTCCATGGCACATTAAGAGAGGTATCGTTTATCGGTTTC---- 759
|||.||||...|.||.|||||..|.|||||.|||||| |||||
BL03626___lig 855 AACGATTCATTACGGGACATTGCGCGAGGTGTCGTTT----GTTTCATTT 900
BSNT_02251___ 760 GAATTCCAAATGGACTGGACCGAA---TGCACGTA--------TGC-GCA 797
|||||..|.||||..||| ||| |||||.|| ||| ||
BL03626___lig 901 GAATTTGACATGGCATGG---GAAAATTGCACTTACAACCGCCTGCTGC- 946
BSNT_02251___ 798 AGTCAT--ACGACAC-TCCAAACCGGTTCACCCAAAGCTCCAGTTCACAA 844
.|||| |.||.|| ||||..|||.|| |.|||.|.||||
BL03626___lig 947 -TTCATTCAAGAAACGTCCATCCCGATT----------TGCAGCTGACAA 985
BSNT_02251___ 845 GCCTGGATAAAATCATATTT--GAAAAG-AATAAAAAAACAAAAGAAGAT 891
||||.||||||.||||.||| .||||| .|| ||||||||||..|||
BL03626___lig 986 GCCTTGATAAAGTCATCTTTCCTAAAAGCGAT---AAAACAAAAGCGGAT 1032
BSNT_02251___ 892 TTTATTCAGTATA--TGATTGAAGTCAGTGACTACCTGCTCCCATTTCTG 939
|..|| .|.||| |.|.||||.||.|.||.|..|||||.||.|||||.
BL03626___lig 1033 TACAT--CGGATACCTTAATGAAATCGGCGATTTTCTGCTTCCGTTTCTC 1080
BSNT_02251___ 940 AAAAACCGGGCTGTCACCGTCATCCGCTATCCGCATGGATCTAGGAGCGA 989
.|.||.|||||..|.|||||.|||||.||||||||.||.||..|..|.||
BL03626___lig 1081 GACAATCGGGCGCTTACCGTTATCCGTTATCCGCACGGTTCCGGCGGAGA 1130
BSNT_02251___ 990 ATCATTTTTCCAAAAAAACAAACCGGACTATGCGCCGGATTTT-----GT 1034
.||.|||||.|||||||||||.||.|||||.||.||.||.||| ||
BL03626___lig 1131 GTCTTTTTTTCAAAAAAACAAGCCCGACTACGCACCCGAATTTATCACGT 1180
BSNT_02251___ 1035 TCAATCTTTC--TATGATGGAAGCCATGAACATATTGTCTGTGAG-GA-T 1080
.|| ||| .||||.| || ||.||.|||||..|||| .|| || |
BL03626___lig 1181 CCA----TTCGGGATGACG--AG-CACGAGCATATCATCTG-CAGCGATT 1222
BSNT_02251___ 1081 ATGTC--TACATTGCTATGGCTTTGCAACCAGCTTGCTTTGGAGTTTCAC 1128
|| || |.| ||||.||||||..|||.||||||||.||||||||.||.
BL03626___lig 1223 AT-TCGGTTC--TGCTGTGGCTTGCCAATCAGCTTGCGTTGGAGTTCCAT 1269
BSNT_02251___ 1129 GTTCCTTTTCAAACCATTAAAA--GCAGGCGTCCGGCTGAGATTGTCATT 1176
.|.|||||||||||..|..|.| || .|.||||.|.||.||.||..|.
BL03626___lig 1270 ATCCCTTTTCAAACGGTGGATACGGC--CCATCCGACCGAAATCGTTTTC 1317
BSNT_02251___ 1177 GATTTAGACCCGCCTTC----GCGAGATGACTTTCTTATGGCCGTGCAG- 1221
|||.|.||.|||||||| .|| ||.||||...||||||| |||
BL03626___lig 1318 GATCTTGATCCGCCTTCAAAGTCG----GAGTTTCCGCTGGCCGT-CAGA 1362
BSNT_02251___ 1222 GCCGCAAATGAACTGAAGCGGCTGTTGGAT----TCCTTTGGCATCACAT 1267
|||||.||.||.|||.|.||..|.||.||| || |||.||..||
BL03626___lig 1363 GCCGCGAAAGAGCTGCACCGTTTATTTGATCAGCTC----GGCCTCTTAT 1408
BSNT_02251___ 1268 CGTACCCGAAGCTGTCCGGCAACAAAGGCATCCAGCTTTATATTCCCTTG 1317
|.|..||.||||||||.||.||.|||||.||.||..|.||||||||..|.
BL03626___lig 1409 CTTTTCCAAAGCTGTCGGGAAATAAAGGGATACAAATCTATATTCCGATT 1458
BSNT_02251___ 1318 TCTCCCGAGGCATTTACGTATGAAGAAACACGCCAATTTAC-------GC 1360
||.....|.||.|||||.|||||||||||.||||..||.|| ||
BL03626___lig 1459 TCAAAAAACGCCTTTACTTATGAAGAAACCCGCCTTTTCACAAGCTTTGC 1508
BSNT_02251___ 1361 AGCTGATCGCAGAGTACTGCACCAAT-GC-ATTTCCCGAGCTCTTTACCA 1408
.|||..| ||.|||..| | || .||||||||.||.||.||.|
BL03626___lig 1509 GGCTTCT-------TATTGCGTC--TCGCTTTTTCCCGATCTGTTCACAA 1549
BSNT_02251___ 1409 CTGAACGCTTGATTAAAAACAGACACGGCAAATTGTATCTTGATTATTTG 1458
|.||||||.||||.||||||||...|||.||..|.|||.||||.|||.||
BL03626___lig 1550 CCGAACGCCTGATCAAAAACAGGGGCGGAAAGCTCTATATTGACTATGTG 1599
BSNT_02251___ 1459 CAGCATGCAGAAGGAAAAACGATTATCTGTCCCTATTCGACGAGAGGAAA 1508
||||||||....|||||||||||.|||||.||.|||||.||.|||||.||
BL03626___lig 1600 CAGCATGCCCCGGGAAAAACGATCATCTGCCCGTATTCCACAAGAGGCAA 1649
BSNT_02251___ 1509 TGAGCTTGGGACTGTTGCAGCCCCGCTCTACTGGCATGAGGTGCAATCAT 1558
|||||||||.||.||.||.||.|||||.|..|||.||||.||.||.|||.
BL03626___lig 1650 TGAGCTTGGCACAGTGGCCGCACCGCTGTTTTGGGATGAAGTCCATTCAG 1699
BSNT_02251___ 1559 CTTTAACACCCGCTCT----GTTTACAATTGATACGGTCATCGATCGAAT 1604
..||..|||| || .|||||.||.||..|.|||.||.|.||.|.
BL03626___lig 1700 ACTTGTCACC----CTTAAATTTTACGATGGAGGCTGTCGTCAAACGCAC 1745
BSNT_02251___ 1605 TAAGAAGCAGGGCTGCCCATTTTTTGA----TTTTTACCG-CAACCCGCA 1649
.|||.|.|..||.||||| |||.|| ||.|| |.| ||.||| ||
BL03626___lig 1746 AAAGGAACTCGGATGCCC---TTTCGAAAGCTTCTT-CAGACAGCCC-CA 1790
BSNT_02251___ 1650 AGACGAACCGCTTAGCGCCATATTGCATCAGTT-GAAGAAAA-------- 1690
.|||.|||.|.|.|..||.||..|..||||.|| .|||||||
BL03626___lig 1791 GGACAAACAGATCAAAGCTATTCTCGATCACTTAAAAGAAAACAACCGTT 1840
BSNT_02251___ 1691 ---AGAGCTGA 1698
|.|.||||
BL03626___lig 1841 CGGAAAACTGA 1851
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