Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05087 and BL03620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:12
# Commandline: needle
# -asequence pep-align/BSNT_05087.1.5803.seq
# -bsequence pep-align/BL03620___ydcL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05087-BL03620___ydcL.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05087-BL03620___ydcL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05087
# 2: BL03620___ydcL
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 369
# Identity: 114/369 (30.9%)
# Similarity: 147/369 (39.8%)
# Gaps: 175/369 (47.4%)
# Score: 587.5
#
#
#=======================================
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 1 MPVYKDKERGTYYFIISYTNRNGEYKQIKRRGFKSSGEAKRAEAETLLRL 50
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 51 ETDDGENEDNPTFEFVAKEYLKWYKKRRKASSYLKTSSIINTHLIPRFGS 100
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 101 KKINNIRSRDIMRFQNDLLDRYAVAHVKKIHQVLSAVFNFAIKQEYTKDN 150
BSNT_05087 1 ---------MEVNKRLNYWEFDEFKKFISVVDDELYRAFFTTLYFSGARK 41
:|.:|.:|||..||||.||..|||:||.|.|.|||:||.||
BL03620___ydc 151 PARLAGNVDIEEDKHINYWTLDEFKAFIQHVDDQLYYALFMTLYYSGMRK 200
BSNT_05087 42 GEMLALTWADVDFDNNLIDINKTEYNRIVTTPKTKSSIRINPMPQKVMEL 91
||:|||||.|:|||:|.|:|:||.||||||.|||.||||...||:.||.|
BL03620___ydc 201 GELLALTWGDIDFDSNTINIDKTVYNRIVTKPKTTSSIRKIMMPKHVMRL 250
BSNT_05087 92 LKGIKKSAEKIAPVKPEYRVFGSFYDSIATSTIDRRYEKYLKLSGVKRIL 141
|..:|...: .|..|.|||.|:|.|:|:|:||:|.:|:|.:.||:|.
BL03620___ydc 251 LAQLKAKTK----TKMTYVVFGEFHDHISTTTLDRKYAEYVKAAKVKKIR 296
BSNT_05087 142 IHEFRHSHASYLIHKRCNPLVIAQRLGHKNVAETLNTYSHLYPSAQKEIV 191
:|:||||||||||::...|.|:|:|||||:|..|||.|||||||.:||.|
BL03620___ydc 297 LHDFRHSHASYLINRNTIPSVVAKRLGHKDVGTTLNIYSHLYPSTEKEAV 346
BSNT_05087 192 ELMDKENF----------- 199
..|: ::|
BL03620___ydc 347 LKME-DDFKTAEIIHLKEA 364
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