Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05087 and BL03620

See Amino acid alignment / Visit BSNT_05087 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:12
# Commandline: needle
#    -asequence dna-align/BSNT_05087.1.5803.seq
#    -bsequence dna-align/BL03620___ydcL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05087-BL03620___ydcL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05087-BL03620___ydcL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05087
# 2: BL03620___ydcL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1132
# Identity:     401/1132 (35.4%)
# Similarity:   401/1132 (35.4%)
# Gaps:         569/1132 (50.3%)
# Score: 1031.0
# 
#
#=======================================

BSNT_05087         0 --------------------------------------------------      0
                                                                       
BL03620___ydc      1 ATGCCTGTCTATAAAGACAAGGAAAGGGGAACATATTATTTTATCATATC     50

BSNT_05087         0 --------------------------------------------------      0
                                                                       
BL03620___ydc     51 CTATACAAACAGAAATGGAGAATACAAACAGATAAAAAGAAGAGGATTTA    100

BSNT_05087         0 --------------------------------------------------      0
                                                                       
BL03620___ydc    101 AATCAAGCGGAGAAGCGAAGAGGGCTGAAGCAGAAACCCTTTTACGACTA    150

BSNT_05087         0 --------------------------------------------------      0
                                                                       
BL03620___ydc    151 GAAACTGACGACGGAGAAAATGAAGATAATCCAACTTTTGAATTTGTCGC    200

BSNT_05087         0 --------------------------------------------------      0
                                                                       
BL03620___ydc    201 AAAAGAATACTTGAAATGGTACAAAAAAAGAAGAAAGGCATCATCATATT    250

BSNT_05087         0 --------------------------------------------------      0
                                                                       
BL03620___ydc    251 TAAAAACAAGTAGCATTATAAATACTCACTTGATACCAAGGTTCGGGAGC    300

BSNT_05087         0 --------------------------------------------------      0
                                                                       
BL03620___ydc    301 AAGAAAATTAACAACATTCGTTCAAGGGACATAATGCGTTTTCAGAATGA    350

BSNT_05087         0 --------------------------------------------------      0
                                                                       
BL03620___ydc    351 TTTGCTTGATAGATATGCCGTTGCGCACGTCAAAAAGATACATCAAGTTT    400

BSNT_05087         0 --------------------------------------------------      0
                                                                       
BL03620___ydc    401 TATCGGCTGTATTTAACTTTGCGATTAAACAAGAGTACACAAAAGATAAT    450

BSNT_05087         1 ---------------------------ATGGAAGTAAATAAA-AGATTGA     22
                                                ||.||||.|.||||| |.| |.|
BL03620___ydc    451 CCAGCACGTTTAGCAGGAAATGTGGATATAGAAGAAGATAAACACA-TCA    499

BSNT_05087        23 ATTATTGGGAGTTTGATGAATTCAAGAAGTTTATTTCAGTGGTTGACGAT     72
                     ||||||||..|||.||.||.||.||...|||||||..|...||.||.|||
BL03620___ydc    500 ATTATTGGACGTTAGACGAGTTTAAAGCGTTTATTCAACACGTAGATGAT    549

BSNT_05087        73 GAATTGTACAGAGCATTTTTCACGACCCTGTATTTCAGCGG--GGCAAGG    120
                     .|.||.||....|||.||||.|.|||.||.||||..|||||  .||   |
BL03620___ydc    550 CAGTTATATTATGCACTTTTTATGACACTCTATTATAGCGGTATGC---G    596

BSNT_05087       121 AAA-GGAGAAATGTTGGCATTGACTTGGGCTGATGTGGATTTCGATAATA    169
                     ||| |||||..|.||.||..|.||.||||..|||.|.|||||.||.|.||
BL03620___ydc    597 AAAGGGAGAGTTATTAGCTCTCACATGGGGAGATATTGATTTTGACAGTA    646

BSNT_05087       170 AC-CTAATTGACATAAATAAAACTGAATACAATCGGATTGTTACTACTCC    218
                     || || ||..|.||..||||.||.|..||.||.||.||.||.||||..||
BL03620___ydc    647 ACACT-ATAAATATCGATAAGACCGTTTATAACCGAATAGTGACTAAACC    695

BSNT_05087       219 TAAAACTAAATCGTCCATTCGAATTAATCCA--ATGCCTCAAAAAGTTAT    266
                     .|||||.|.||||||.||.||||  ||..||  ||||||.||.|.||.||
BL03620___ydc    696 AAAAACAACATCGTCTATACGAA--AAATCATGATGCCTAAACACGTAAT    743

BSNT_05087       267 GGAATTATTAAAAGGCATAAAAAAAAGCGCCGAAAAAATAGCACC-GGTC    315
                     |...||||||    ||..||..||||||      ||||    ||| .|.|
BL03620___ydc    744 GAGGTTATTA----GCTCAATTAAAAGC------AAAA----ACCAAGAC    779

BSNT_05087       316 AAACCTGA-GTATAGAGTTTTTGGTTCATTCTATGATAGCATTGCAACCA    364
                     |||..||| .|||..|||.|||||...|||..||||...||||.||||.|
BL03620___ydc    780 AAAAATGACATATGTAGTATTTGGGGAATTTCATGACCACATTTCAACTA    829

BSNT_05087       365 GTACAATAGATAGACGATACGAAAAATAC-TTAAAATTGTCTGGA---GT    410
                     ..|||.||||||||..|||||...||||| ||||    |.|.|.|   ||
BL03620___ydc    830 CAACACTAGATAGAAAATACGCTGAATACGTTAA----GGCGGCAAAGGT    875

BSNT_05087       411 CAAAAGGATTCTTATACATGAATTTAGACACTCTCACGCGTCATACTTAA    460
                     .||||..||||.|.|||||||.||..|.||.||.||.||....||.||||
BL03620___ydc    876 TAAAAAAATTCGTCTACATGATTTCCGCCATTCACATGCTAGCTATTTAA    925

BSNT_05087       461 TCCATAAGAG--ATGTAATCC--TCTCGTCATAGCCCAAAGATTAGGACA    506
                     |   |||.||  |...|||||  ||| |||.|.||..||||..|.||.||
BL03620___ydc    926 T---TAACAGGAACACAATCCCATCT-GTCGTGGCAAAAAGGCTCGGTCA    971

BSNT_05087       507 CAAAAATGTGGCTGAAACATTGAACACATATAGCCACCTTTACCC---CT    553
                     |||..||||||....||||.|.||||.|||.|||||..|.||.||   |.
BL03620___ydc    972 CAAGGATGTGGGCACAACACTCAACATATACAGCCATTTATATCCGAGCA   1021

BSNT_05087       554 CAGCCCAAAAAGAAATAGTTGAGCTT----ATGGACA---------AAGA    590
                     |||   ||||||||...||    |.|    ||||| |         ||||
BL03620___ydc   1022 CAG---AAAAAGAAGCCGT----CCTCAAAATGGA-AGACGACTTCAAGA   1063

BSNT_05087       591 ------AAAT--TTC----TAA----------    600
                           ||||  |||    |||          
BL03620___ydc   1064 CTGCTGAAATTATTCACCTTAAAGAAGCTTGA   1095


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