Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05087 and BL03620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:12
# Commandline: needle
# -asequence dna-align/BSNT_05087.1.5803.seq
# -bsequence dna-align/BL03620___ydcL.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05087-BL03620___ydcL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05087-BL03620___ydcL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05087
# 2: BL03620___ydcL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1132
# Identity: 401/1132 (35.4%)
# Similarity: 401/1132 (35.4%)
# Gaps: 569/1132 (50.3%)
# Score: 1031.0
#
#
#=======================================
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 1 ATGCCTGTCTATAAAGACAAGGAAAGGGGAACATATTATTTTATCATATC 50
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 51 CTATACAAACAGAAATGGAGAATACAAACAGATAAAAAGAAGAGGATTTA 100
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 101 AATCAAGCGGAGAAGCGAAGAGGGCTGAAGCAGAAACCCTTTTACGACTA 150
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 151 GAAACTGACGACGGAGAAAATGAAGATAATCCAACTTTTGAATTTGTCGC 200
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 201 AAAAGAATACTTGAAATGGTACAAAAAAAGAAGAAAGGCATCATCATATT 250
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 251 TAAAAACAAGTAGCATTATAAATACTCACTTGATACCAAGGTTCGGGAGC 300
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 301 AAGAAAATTAACAACATTCGTTCAAGGGACATAATGCGTTTTCAGAATGA 350
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 351 TTTGCTTGATAGATATGCCGTTGCGCACGTCAAAAAGATACATCAAGTTT 400
BSNT_05087 0 -------------------------------------------------- 0
BL03620___ydc 401 TATCGGCTGTATTTAACTTTGCGATTAAACAAGAGTACACAAAAGATAAT 450
BSNT_05087 1 ---------------------------ATGGAAGTAAATAAA-AGATTGA 22
||.||||.|.||||| |.| |.|
BL03620___ydc 451 CCAGCACGTTTAGCAGGAAATGTGGATATAGAAGAAGATAAACACA-TCA 499
BSNT_05087 23 ATTATTGGGAGTTTGATGAATTCAAGAAGTTTATTTCAGTGGTTGACGAT 72
||||||||..|||.||.||.||.||...|||||||..|...||.||.|||
BL03620___ydc 500 ATTATTGGACGTTAGACGAGTTTAAAGCGTTTATTCAACACGTAGATGAT 549
BSNT_05087 73 GAATTGTACAGAGCATTTTTCACGACCCTGTATTTCAGCGG--GGCAAGG 120
.|.||.||....|||.||||.|.|||.||.||||..||||| .|| |
BL03620___ydc 550 CAGTTATATTATGCACTTTTTATGACACTCTATTATAGCGGTATGC---G 596
BSNT_05087 121 AAA-GGAGAAATGTTGGCATTGACTTGGGCTGATGTGGATTTCGATAATA 169
||| |||||..|.||.||..|.||.||||..|||.|.|||||.||.|.||
BL03620___ydc 597 AAAGGGAGAGTTATTAGCTCTCACATGGGGAGATATTGATTTTGACAGTA 646
BSNT_05087 170 AC-CTAATTGACATAAATAAAACTGAATACAATCGGATTGTTACTACTCC 218
|| || ||..|.||..||||.||.|..||.||.||.||.||.||||..||
BL03620___ydc 647 ACACT-ATAAATATCGATAAGACCGTTTATAACCGAATAGTGACTAAACC 695
BSNT_05087 219 TAAAACTAAATCGTCCATTCGAATTAATCCA--ATGCCTCAAAAAGTTAT 266
.|||||.|.||||||.||.|||| ||..|| ||||||.||.|.||.||
BL03620___ydc 696 AAAAACAACATCGTCTATACGAA--AAATCATGATGCCTAAACACGTAAT 743
BSNT_05087 267 GGAATTATTAAAAGGCATAAAAAAAAGCGCCGAAAAAATAGCACC-GGTC 315
|...|||||| ||..||..|||||| |||| ||| .|.|
BL03620___ydc 744 GAGGTTATTA----GCTCAATTAAAAGC------AAAA----ACCAAGAC 779
BSNT_05087 316 AAACCTGA-GTATAGAGTTTTTGGTTCATTCTATGATAGCATTGCAACCA 364
|||..||| .|||..|||.|||||...|||..||||...||||.||||.|
BL03620___ydc 780 AAAAATGACATATGTAGTATTTGGGGAATTTCATGACCACATTTCAACTA 829
BSNT_05087 365 GTACAATAGATAGACGATACGAAAAATAC-TTAAAATTGTCTGGA---GT 410
..|||.||||||||..|||||...||||| |||| |.|.|.| ||
BL03620___ydc 830 CAACACTAGATAGAAAATACGCTGAATACGTTAA----GGCGGCAAAGGT 875
BSNT_05087 411 CAAAAGGATTCTTATACATGAATTTAGACACTCTCACGCGTCATACTTAA 460
.||||..||||.|.|||||||.||..|.||.||.||.||....||.||||
BL03620___ydc 876 TAAAAAAATTCGTCTACATGATTTCCGCCATTCACATGCTAGCTATTTAA 925
BSNT_05087 461 TCCATAAGAG--ATGTAATCC--TCTCGTCATAGCCCAAAGATTAGGACA 506
| |||.|| |...||||| ||| |||.|.||..||||..|.||.||
BL03620___ydc 926 T---TAACAGGAACACAATCCCATCT-GTCGTGGCAAAAAGGCTCGGTCA 971
BSNT_05087 507 CAAAAATGTGGCTGAAACATTGAACACATATAGCCACCTTTACCC---CT 553
|||..||||||....||||.|.||||.|||.|||||..|.||.|| |.
BL03620___ydc 972 CAAGGATGTGGGCACAACACTCAACATATACAGCCATTTATATCCGAGCA 1021
BSNT_05087 554 CAGCCCAAAAAGAAATAGTTGAGCTT----ATGGACA---------AAGA 590
||| ||||||||...|| |.| ||||| | ||||
BL03620___ydc 1022 CAG---AAAAAGAAGCCGT----CCTCAAAATGGA-AGACGACTTCAAGA 1063
BSNT_05087 591 ------AAAT--TTC----TAA---------- 600
|||| ||| |||
BL03620___ydc 1064 CTGCTGAAATTATTCACCTTAAAGAAGCTTGA 1095
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