Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02361 and BL03587

See DNA alignment / Visit BSNT_02361 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:54
# Commandline: needle
#    -asequence pep-align/BSNT_02361___ccpC.1.5803.seq
#    -bsequence pep-align/BL03587___ccpC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02361___ccpC-BL03587___ccpC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02361___ccpC-BL03587___ccpC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02361___ccpC
# 2: BL03587___ccpC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 294
# Identity:     248/294 (84.4%)
# Similarity:   263/294 (89.5%)
# Gaps:           4/294 ( 1.4%)
# Score: 1286.0
# 
#
#=======================================

BSNT_02361___      1 MQLQELHMLVVLAEELNMRKAAERLFVSQPALSQRLQTIEKAWGKKIFLR     50
                     |||||||||||||||||||||||||||||||||||||||||:||.|||||
BL03587___ccp      1 MQLQELHMLVVLAEELNMRKAAERLFVSQPALSQRLQTIEKSWGTKIFLR     50

BSNT_02361___     51 SQKGLTVTPAGEKIIQFANDVTLEQERIRENIDELEGEIHGTLKLAVASI    100
                     ||||||||.|||||||||.|||||||::||||||||||||||||||.|||
BL03587___ccp     51 SQKGLTVTSAGEKIIQFAKDVTLEQEKVRENIDELEGEIHGTLKLAAASI    100

BSNT_02361___    101 IGQHWLPKVLKTYVEKYPNAKISLITGWSSEMLKSLYEDQVHIGIIRGNP    150
                     |||||||.||||||::|||.||||:||||||||||||||.||||||||||
BL03587___ccp    101 IGQHWLPNVLKTYVKQYPNVKISLVTGWSSEMLKSLYEDHVHIGIIRGNP    150

BSNT_02361___    151 EWKGRKDYLMTDHLYLVDTEISCIEDIAHTERPFIQFKSDSTYFQEIQHW    200
                     ||||.|.|||.|.||||||||..|||||.||||||||||||||:||||||
BL03587___ccp    151 EWKGPKHYLMRDELYLVDTEIRNIEDIAKTERPFIQFKSDSTYYQEIQHW    200

BSNT_02361___    201 WHQKFKTSPKQTILVDQIETCKQMALHGIGYAILPSVTLQNE-DKVNKMP    249
                     |||||||||||||:|||||||||||.|||||||||||||... ..|:::|
BL03587___ccp    201 WHQKFKTSPKQTIIVDQIETCKQMAFHGIGYAILPSVTLHGSGSHVHQIP    250

BSNT_02361___    250 LLDMKGHPIGRDTWLLGYEPAFELKQVQAFVQVIKDMLDQENPF    293
                     |||.||..||||||||||||||:||||||||:|:|:....|   
BL03587___ccp    251 LLDAKGKAIGRDTWLLGYEPAFQLKQVQAFVEVVKECTAME---    291


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.