Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02340 and BL03575
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence pep-align/BSNT_02340___ykuA.1.5803.seq
# -bsequence pep-align/BL03575___pbpH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02340___ykuA-BL03575___pbpH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02340___ykuA-BL03575___pbpH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02340___ykuA
# 2: BL03575___pbpH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 711
# Identity: 477/711 (67.1%)
# Similarity: 572/711 (80.5%)
# Gaps: 14/711 ( 2.0%)
# Score: 2454.5
#
#
#=======================================
BSNT_02340___ 1 MTEIGREPK--KKSKGNRAIRMNLFFLAVFVLFTALIFKLGVVQIVEGEQ 48
|||...:|. |||:.:|..|:||:|.|||.||.|||.|||:||||.||.
BL03575___pbp 1 MTESQHDPAEIKKSRRSRLWRINLYFFAVFTLFAALIVKLGLVQIVNGEA 50
BSNT_02340___ 49 HEEDAEKSNAKTAYYPAPRGKMYDRNQKVAVDNQSVPEIVYVSTSSTKTE 98
:|::|.|:.||.|.|||||||||||..:|.|||||||.|.|...:|||||
BL03575___pbp 51 YEQEASKTEAKIASYPAPRGKMYDRYGRVVVDNQSVPAITYTMMTSTKTE 100
BSNT_02340___ 99 DKIKTAKRLASFIHIDTEFLKERDLRDYWIAAHPKKAAALLKESESNLKG 148
:||.|||:||..|.|||.|||||||:|||:|.||||||||||:||..||.
BL03575___pbp 101 EKISTAKKLAELIDIDTSFLKERDLKDYWLARHPKKAAALLKDSEKTLKS 150
BSNT_02340___ 149 DQAYKLQIERVPDQELKAIQQDDEEMETAAIYTRFSSGNAYEPQIVKAMN 198
||.||||::|||.:|:||:::|.:|::.|||:.|||.|.||||||||||:
BL03575___pbp 151 DQTYKLQVDRVPAEEIKALEKDKDELKVAAIFRRFSGGYAYEPQIVKAMS 200
BSNT_02340___ 199 PNKSNSNGKNGALLDEKKNSSQRPKNDLTYDEISIVSEHLEELPGIDIVN 248
|..: |||.|.|.::|.|.|.|.|||||:|:|.||||||||||:|::.
BL03575___pbp 201 PKTA---GKNDAQLLDEKASKQMPANDLTYEEVSRVSEHLEELPGVDVIM 247
BSNT_02340___ 249 DWTRKYPYDKTLYSVFGGVTTPDQGLLSDRKDFYLTRGYANNDRVGKSYL 298
||||||||:|||||:|||||||:|||:.||:|||||||||.|||||||||
BL03575___pbp 248 DWTRKYPYEKTLYSIFGGVTTPEQGLIKDREDFYLTRGYARNDRVGKSYL 297
BSNT_02340___ 299 EYQYEEYLNSHKEKVEYVEDNKGNVVSQKTIDKGSRGYDLQLSFDMELQA 348
|||||||||..|.||:|.|:..|.|:||:|:|:|.|||||||:||||||.
BL03575___pbp 298 EYQYEEYLNPKKAKVQYTENRSGKVISQETVDEGRRGYDLQLTFDMELQK 347
BSNT_02340___ 349 KVEKIIEEEVRNSRARGNYMLDRAFAVMMDPNNGDILSMAGKKIDLKTNK 398
|||:.||||:...|. .||||||||.||||||||||||||||:| ...|
BL03575___pbp 348 KVEEAIEEELNKFRG-SNYMLDRAFVVMMDPNNGDILSMAGKRI--VDGK 394
BSNT_02340___ 399 IEDYAIGAFTTQYEMGSAVKGATVLAGYQDGIPHYKYFVDTPLYLAGYGN 448
|.|||||||||||||||||||||||||||||:||.:.::|..|..|| |.
BL03575___pbp 395 ITDYAIGAFTTQYEMGSAVKGATVLAGYQDGMPHGQSYLDQELSFAG-GV 443
BSNT_02340___ 449 KPKKSYM--NMGTINELTALQKSSNVYMFNVAMHIAGVTYKPHGPLPADQ 496
| |.||. .:|..||:.||:||||||||.|||.:||:||.|:|||||:.
BL03575___pbp 444 K-KGSYRGNTIGWANEVRALEKSSNVYMFYVAMRMAGITYVPNGPLPANL 492
BSNT_02340___ 497 KDLNKMRNYYSQFGLGVKTGIDLPQESAGMQTTPDAVGGLILDLAIGQYD 546
:||.|||.|::|||||||||||||||||||||.|..||||:||.||||:|
BL03575___pbp 493 EDLKKMRYYFNQFGLGVKTGIDLPQESAGMQTNPKIVGGLLLDEAIGQFD 542
BSNT_02340___ 547 TYTPLQMAQYISSIANGGYRIQPRIVTSVHEPSKKEGLGKTIEQRKPNIL 596
||||||:|||:|:|||||||:|||:|.|:|:| :.|.||..||:|..|:|
BL03575___pbp 543 TYTPLQLAQYVSTIANGGYRLQPRVVKSIHQP-ESEKLGPVIEERSANVL 591
BSNT_02340___ 597 NKINNSESDIQQVKTGMKLVTTSGTAKNTF-TEDVSGKTGTAETFYYGTN 645
|:||||:|||..||.|.|.||.:|||...| :.|||||||||:|.|||||
BL03575___pbp 592 NRINNSQSDIAIVKQGFKRVTQTGTAAGAFGSLDVSGKTGTAQTQYYGTN 641
BSNT_02340___ 646 RNWWGKKTYNLTFVGYYPSKNPKVAFSVVVPSVNDDDKINKIIAKRAIHA 695
|||||.:|||:||.|||||:||:||||||||:|:|..|:||.||.:.:.|
BL03575___pbp 642 RNWWGTRTYNITFAGYYPSENPQVAFSVVVPNVDDKTKMNKNIAAKIVKA 691
BSNT_02340___ 696 YAELEKKHSKK 706
|.:|:||:||.
BL03575___pbp 692 YVDLQKKYSKD 702
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