Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02340 and BL03575
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_02340___ykuA.1.5803.seq
# -bsequence dna-align/BL03575___pbpH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02340___ykuA-BL03575___pbpH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02340___ykuA-BL03575___pbpH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02340___ykuA
# 2: BL03575___pbpH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2267
# Identity: 1449/2267 (63.9%)
# Similarity: 1449/2267 (63.9%)
# Gaps: 304/2267 (13.4%)
# Score: 4324.5
#
#
#=======================================
BSNT_02340___ 1 GTGACTGAA----ATAGGACGTGAACC------AAAGAAAAAGAGCA--- 37
|||||.||| | ||.|||.|| ||..||||||||||
BL03575___pbp 1 GTGACAGAATCTCA----ACATGATCCGGCTGAAATCAAAAAGAGCAGGC 46
BSNT_02340___ 38 ----------AAGGAAACAGAGCAATCAGAATGAACCTTTTTTTCCTAGC 77
|.|| |.||.|||.|.|.| |||.|||.| |.
BL03575___pbp 47 GTTCGCGTTTATGG---CGGATCAACCTGTA-----CTTCTTTGC---GG 85
BSNT_02340___ 78 TGT---CTTTGTTCTATTCACTGCATTAATTTTTAAGCTCGGGGTTGTTC 124
||| ||||| |||.||||..|.|||.|.|||||.||..|.||.|
BL03575___pbp 86 TGTTCACTTTG-----TTCGCTGCGCTGATTGTCAAGCTGGGCCTCGTGC 130
BSNT_02340___ 125 AAATTGTTGAAGGCGAACAGCATGAAGAAGACGCTGAGAAATCAAATGCA 174
||||.||..|.||.||...|.||||..|.||.|||..||||.|..|.||.
BL03575___pbp 131 AAATCGTCAATGGAGAGGCGTATGAGCAGGAAGCTTCGAAAACCGAGGCG 180
BSNT_02340___ 175 AAAACAGCTTACTATCCTGCGCCTCGCGGGAAGATGTACGACAGAAATCA 224
||||..||.|..||.||.||.||.||.||.||.|||||.||||||.|...
BL03575___pbp 181 AAAATTGCGTCATACCCGGCACCGCGGGGTAAAATGTATGACAGATACGG 230
BSNT_02340___ 225 GAAAGTTGCTGTCGACAACCAGAGCGTTCCAGAAATTGTGTATGTATCAA 274
|...||.|.||||||||||||.||||||||.|..|| .|
BL03575___pbp 231 GCGGGTGGTTGTCGACAACCAAAGCGTTCCCGCGAT------------CA 268
BSNT_02340___ 275 CAT------------CTAGCACAAAAACAGAAGATAAAATCAAAACAGCG 312
||| |||||||||||||.||.||.|||||||..|||||.
BL03575___pbp 269 CATATACGATGATGACTAGCACAAAAACGGAGGAAAAAATCAGCACAGCC 318
BSNT_02340___ 313 AAGCGGCTTGCTTCTTTCATTCATATTGATAC--CGAATTTTTGAAGGAA 360
||....||.||....||.||..||||.||||| || |||.||||.||.
BL03575___pbp 319 AAAAAACTCGCAGAATTGATCGATATCGATACTTCG--TTTCTGAAAGAG 366
BSNT_02340___ 361 AGGGATCTTCGTGATTACTGGATCG-CAGCTCATCCGAAAAAAGCCGCCG 409
||.|||||....|||||||||.|.| ||| .||.|||||||||||.||.|
BL03575___pbp 367 AGAGATCTGAAAGATTACTGGCTTGCCAG-ACACCCGAAAAAAGCTGCTG 415
BSNT_02340___ 410 CTCTGCTTAAGGA-ATC-AGAAAGC-----AATCTGAAAGGAGACCAGGC 452
|.||.||.||.|| |.| |||||.| |.||| ||.||..|
BL03575___pbp 416 CACTTCTGAAAGACAGCGAGAAAACCCTCAAGTCT-------GATCAAAC 458
BSNT_02340___ 453 TTACAAGCTTCAAATAGAGCGTGTTCCGGATCAAGA-ATTAAAG-GCTAT 500
.|||||||||||..|.||.||.|||||||...|||| ||.|||| |||
BL03575___pbp 459 ATACAAGCTTCAGGTGGACCGCGTTCCGGCGGAAGAGATCAAAGCGCT-- 506
BSNT_02340___ 501 TCAGCAAGATGACGAAGAAATG----GAAACT-GCTGCGATATATACAAG 545
|.||.|.|||.||| ||| .|||.| ||.|||||.|..|.|||
BL03575___pbp 507 ---GGAAAAGGACAAAG--ATGAGCTTAAAGTCGCAGCGATTTTCAGAAG 551
BSNT_02340___ 546 GTTTTCAAGCGGAAATGCTTACGAACCTCAAATCGTAAAGGCAATGAATC 595
.|||||..||||..||||.||.||.||.||||||||.|||||.||||..|
BL03575___pbp 552 ATTTTCTGGCGGCTATGCGTATGAGCCGCAAATCGTCAAGGCGATGAGCC 601
BSNT_02340___ 596 CAAATAAGAGCAATAGCAATGGAAAAAACGGAGC---GCTGCTTGATGAG 642
|.|| ||..|| .||.|||||||..|| |||.|||||||||
BL03575___pbp 602 CGAA-------AACCGC--GGGGAAAAACGATGCGCAGCTCCTTGATGAG 642
BSNT_02340___ 643 AAGAAAAACTCCTCGCAAA--------GACCAAAAAATGACTTAACATAT 684
||| .||.|| ||| |.|| ||.||.||.||.|||
BL03575___pbp 643 AAG----GCTTCT---AAACAGATGCCGGCC----AACGATTTGACGTAT 681
BSNT_02340___ 685 GATGAAATTTCCATTGTTTCTGAGCATTTAGAAGAACTTCCGGGAATCGA 734
||.|||.|.||....|||||.||||||.|.||.|||||.||.||..||||
BL03575___pbp 682 GAGGAAGTCTCACGCGTTTCCGAGCATCTTGAGGAACTGCCCGGCGTCGA 731
BSNT_02340___ 735 TATCGTAAACGATTGGACACGAAAATATCCTTATGACAAAACCCTTTATT 784
..||.|.|..||.|||||..|.||||||||||||||.|||||.||.||.|
BL03575___pbp 732 CGTCATCATGGACTGGACCAGGAAATATCCTTATGAAAAAACGCTCTACT 781
BSNT_02340___ 785 CTGTTTTCGGGGGCGTCACGACACCTGATCAGGGCCTGCTGAGCGACCGG 834
|..|||||||.||||||||.||.|||||.||.||.||..|.|..||||||
BL03575___pbp 782 CCATTTTCGGAGGCGTCACAACGCCTGAACAAGGGCTTATCAAGGACCGG 831
BSNT_02340___ 835 AAAGATTTCTACTTAACAAGAGGCTATGCGAATAATGACAGGGTGGGAAA 884
.||||.||.|||.|.|||||.||.|||||....||||||||.||||||||
BL03575___pbp 832 GAAGACTTTTACCTGACAAGGGGATATGCCCGGAATGACAGAGTGGGAAA 881
BSNT_02340___ 885 AAGTTATTTAGAGTATCAATATGAAGAATATTTAAATTCGCATAAAGAAA 934
|||.|||.|.|||||||||||||||||||||||||||.||.|.||||..|
BL03575___pbp 882 AAGCTATCTCGAGTATCAATATGAAGAATATTTAAATCCGAAAAAAGCGA 931
BSNT_02340___ 935 AAGTGGAATACGTA--GAAGATAATAAAGGAAATGTCGTCAGCCAAAAAA 982
||||..|||| || |||.|...|..||||||.||..|||||||..|||
BL03575___pbp 932 AAGTCCAATA--TACCGAAAACCGTTCAGGAAAGGTTATCAGCCAGGAAA 979
BSNT_02340___ 983 CCATTGATAAGGGCAGCAGGGGATACGATCTTCAGCTTTCTTTTGACATG 1032
|..|||||.|.||.||..|.||.||||||||.|||||..|.||.||||||
BL03575___pbp 980 CGGTTGATGAAGGAAGACGCGGCTACGATCTGCAGCTGACGTTCGACATG 1029
BSNT_02340___ 1033 GAGCTTCAGGCAAAG---GTAGAAAAGATCATTGAAGAAGAAG--TAAGA 1077
|||||.|| |||| ||.|||.||...||.|||| ||.|| |||.|
BL03575___pbp 1030 GAGCTCCA---AAAGAAAGTCGAAGAGGCTATCGAAG-AGGAGCTTAATA 1075
BSNT_02340___ 1078 AACAGCCGTGCACGCGG---AAATTACATGCTTGACAGAGCCTTTGCCGT 1124
|| |.| ||||| |||.||||||||.||||||||.||.|.|||
BL03575___pbp 1076 AA------TTC-CGCGGCTCAAACTACATGCTGGACAGAGCGTTCGTCGT 1118
BSNT_02340___ 1125 AATGATGGACCCGAATAACGGCGATATTTTATCAATGGCAGGGAAAAAGA 1174
.||||||||||||||||||||.||.|||.|.||.|||||.||.||...||
BL03575___pbp 1119 CATGATGGACCCGAATAACGGAGACATTCTGTCCATGGCCGGAAAGCGGA 1168
BSNT_02340___ 1175 TAGATTTA----AAAACCAACAAAATTGAAGATTATGCGATAGGGGCATT 1220
|.| |..| ||||.||.| ||.|||||.||.||.||.||
BL03575___pbp 1169 TCG-TCGACGGCAAAATCACC---------GACTATGCAATCGGCGCGTT 1208
BSNT_02340___ 1221 TACCACCCAATATGAAATGGGATCAGCAGTAAAGGGGGCCACCGTGCTAG 1270
|||.|||||.||.|||||||||||.||.||.||.||.||.||||||||.|
BL03575___pbp 1209 TACAACCCAGTACGAAATGGGATCGGCGGTCAAAGGCGCGACCGTGCTTG 1258
BSNT_02340___ 1271 CCGGCTATCAGGACGGAATCCCGCAT---TATAAATATTTTGTTGATACA 1317
||||||||||||||||.||.|||||| .|.|..|||| ||.|
BL03575___pbp 1259 CCGGCTATCAGGACGGCATGCCGCATGGGCAGAGTTATT-------TAGA 1301
BSNT_02340___ 1318 CC----TCTTTATTTAGCAGGATACGGTAACAAACCG--AAGAAA---TC 1358
|| .||....||.||||| ||.| | ||.||| ||
BL03575___pbp 1302 CCAAGAGCTGAGCTTCGCAGG----GGGA-------GTTAAAAAAGGTTC 1340
BSNT_02340___ 1359 CTACATGAACATGGGA---ACCATC---------AATGAATTAACCGCTC 1396
||||| || ||| ||.||| ||||||.|.|..||.|
BL03575___pbp 1341 CTACA-GA-----GGAAACACTATCGGTTGGGCTAATGAAGTTAGAGCGC 1384
BSNT_02340___ 1397 TGCAAAAAAGTTCAAACGTATATATGTTTAATGTTGCCATGCACATTGCC 1446
||.||||||||||||||||.||||||||..||||.||.|||...||.||.
BL03575___pbp 1385 TGGAAAAAAGTTCAAACGTTTATATGTTCTATGTGGCAATGAGAATGGCA 1434
BSNT_02340___ 1447 GGTGTCACATACAAGCCGCATGGACCTCTTCCTGCTGACC-AGAAGGATT 1495
||..|.||.||....|||.|.||.||.|||||.||..||| || ||||.|
BL03575___pbp 1435 GGAATTACGTATGTACCGAACGGCCCGCTTCCGGCGAACCTAG-AGGACT 1483
BSNT_02340___ 1496 TAAACAAAATGAGAAATTACTACAGCCAATTTGGCCTGGGAGTAAAGACA 1545
||||.||||||||..||||||.||..|||||||||||.||.|||||.|||
BL03575___pbp 1484 TAAAGAAAATGAGGTATTACTTCAATCAATTTGGCCTTGGGGTAAAAACA 1533
BSNT_02340___ 1546 GGTATCGATCTT-CCGCAGGAATCAGCCGGAATGCAAACTACACCTGATG 1594
||.||||| ||| ||||||||.||.|||||.|||||.||.|..||..|..
BL03575___pbp 1534 GGCATCGA-CTTGCCGCAGGAGTCGGCCGGGATGCAGACAAACCCAAAAA 1582
BSNT_02340___ 1595 CGGTAGGGGGGTTAATTTTAGACTTG--GCCATTGGACAATACGATACAT 1642
..||.|||||..|..|..|.|| || ||.||.||.||.|..||.||.|
BL03575___pbp 1583 TAGTCGGGGGTCTCCTCCTCGA--TGAAGCGATCGGCCAGTTTGACACGT 1630
BSNT_02340___ 1643 ATACACCGCTTCAAATGGCACAGTACATCTCATCAATTGCCAATGGGGGG 1692
|.||.||..|.||..|.||.||.||..|.|||.|.||.|||||.||.||.
BL03575___pbp 1631 ACACGCCTTTGCAGCTCGCCCAATATGTTTCAACGATCGCCAACGGCGGA 1680
BSNT_02340___ 1693 TACCGCATTCAGCCAAGAATTGTTACAAGTGTTCATGAGCC---CAGCAA 1739
|||.|..|.|||||.|||.|.||.|.|||..||||..|||| .|||.|
BL03575___pbp 1681 TACAGGTTGCAGCCGAGAGTCGTGAAAAGCATTCACCAGCCAGAAAGCGA 1730
BSNT_02340___ 1740 AAAAGAAGGCCTTGGGAAGACCATTGAACAAAGAAAGC----CAAACATT 1785
|||| ||.||...|..||||| ||||..|| |.||..|.
BL03575___pbp 1731 AAAA------CTCGGTCCGGTCATTG----AAGAGCGCTCTGCCAATGTG 1770
BSNT_02340___ 1786 CTCAACAAAATTAACAACTCAGAAAGTGACAT--TCAGCAGGTGAAGACT 1833
||.||....||.|||||.||..||||.||||| .||.| ||.|||...
BL03575___pbp 1771 CTGAATCGTATCAACAATTCTCAAAGCGACATCGCCATC--GTCAAGCAA 1818
BSNT_02340___ 1834 GGAATGAAGCTAGTTACC---------ACTTCAG-----------GGACA 1863
|||.|.||.|.|||.||| |||.||| ||
BL03575___pbp 1819 GGATTTAAACGAGTAACCCAGACGGGAACTGCAGCCGGCGCATTCGG--- 1865
BSNT_02340___ 1864 GCTAAAAATACGTTTACAGAAGATGTATCAGGGAAAACGGGAACAGCGGA 1913
|.||.|| ||.||||||||.|||||.|||||.|||.|
BL03575___pbp 1866 --------TTCGCTT------GACGTATCAGGCAAAACCGGAACGGCGCA 1901
BSNT_02340___ 1914 AACATTTTACTACGGCACGAATCGCAACTGGTGGGGGAAAAAAACATACA 1963
.||....|||||||||||.||.||.|||||||||||||..|..||.||||
BL03575___pbp 1902 GACGCAATACTACGGCACAAACCGAAACTGGTGGGGGACTAGGACTTACA 1951
BSNT_02340___ 1964 ATCTGACTTTTGTCGGCTATTACCCATCGAAAAATCCAAAAGTGGCTTTT 2013
||.|.||.||||.||||||||||||.|||.|||||||..|.||.||.||.
BL03575___pbp 1952 ATATCACCTTTGCCGGCTATTACCCGTCGGAAAATCCGCAGGTCGCCTTC 2001
BSNT_02340___ 2014 AGTGTTGTTGTTCCATCAGTAAATGATGATGA------TAAGATCAATAA 2057
||.|||||.||.|| .||||..||.|| .|||||.||.||
BL03575___pbp 2002 AGCGTTGTCGTCCC------GAATGTCGACGACAAAACGAAGATGAACAA 2045
BSNT_02340___ 2058 AATTAT---TGCCAAAAGAGCTATCCACGCCTACGCAGAGCTCGAAAAAA 2104
||..|| .|||||||..| ||.|.|||||.|..||.||..||||||
BL03575___pbp 2046 AAACATCGCCGCCAAAATCG---TCAAAGCCTATGTCGATCTGCAAAAAA 2092
BSNT_02340___ 2105 AACACAGTAAAAAATAA 2121
||.||||.|||.|.||.
BL03575___pbp 2093 AATACAGCAAAGATTAG 2109
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