Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03242 and BL03305

See DNA alignment / Visit BSNT_03242 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:54
# Commandline: needle
#    -asequence pep-align/BSNT_03242___ypmR.1.5803.seq
#    -bsequence pep-align/BL03305___ypmR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03242___ypmR-BL03305___ypmR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03242___ypmR-BL03305___ypmR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03242___ypmR
# 2: BL03305___ypmR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 255
# Identity:     152/255 (59.6%)
# Similarity:   189/255 (74.1%)
# Gaps:           5/255 ( 2.0%)
# Score: 759.0
# 
#
#=======================================

BSNT_03242___      1 MKLRIFSIMASLILLLTACTSIRTSSEGKQKAHETKTKEHIVIAAVGDSL     50
                     |.:|..::|.:|:.||:|||.   .:.|.:|. ....|..||||||||||
BL03305___ypm      1 MNIRFITVMMALVCLLSACTE---WNAGVEKT-SVSPKRDIVIAAVGDSL     46

BSNT_03242___     51 TEGVGDPDGKGYVGKVADSIRSDKQVKTVDVKNYAVKGNRSDDLLEKLKD    100
                     ||||||.:.|||||.|||.:.|...||:|.||||||||:|:|.|||:|||
BL03305___ypm     47 TEGVGDQEKKGYVGMVADELESRSDVKSVTVKNYAVKGSRTDQLLERLKD     96

BSNT_03242___    101 KKVQKGIKDADYVFFTIGGNDLMKILRQNFLQLTVEPFQEAEKPYEKRFE    150
                     |:||:|:|||||:.||||||||||::||||..||:.||:..:|.:||||.
BL03305___ypm     97 KEVQEGLKDADYILFTIGGNDLMKVVRQNFAHLTLTPFRAEQKLFEKRFS    146

BSNT_03242___    151 KIISEIRELNDHAELIYVSMYNPFTFTLSELNEINGVVTDWNHIAEKELK    200
                     .|::||||.|..||||||||||||.||||||.|::.||.:||..|||.||
BL03305___ypm    147 NILAEIREQNASAELIYVSMYNPFKFTLSELREVDQVVDEWNEGAEKRLK    196

BSNT_03242___    201 KDKHAKIVHIEDLFNQKSDSSRISEEDDFHPNGTGYSLIAKRVYQAIKKE    250
                     |..:.|:..|.|:|.:.||..:|: ||:||||..||||||||||:.||.|
BL03305___ypm    197 KVSNTKMADIADIFEEYSDEKKIA-EDEFHPNQYGYSLIAKRVYEQIKNE    245

BSNT_03242___    251 GLPKE    255
                     .||.|
BL03305___ypm    246 DLPAE    250


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