Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03242 and BL03305

See Amino acid alignment / Visit BSNT_03242 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:54
# Commandline: needle
#    -asequence dna-align/BSNT_03242___ypmR.1.5803.seq
#    -bsequence dna-align/BL03305___ypmR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03242___ypmR-BL03305___ypmR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03242___ypmR-BL03305___ypmR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03242___ypmR
# 2: BL03305___ypmR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 828
# Identity:     515/828 (62.2%)
# Similarity:   515/828 (62.2%)
# Gaps:         135/828 (16.3%)
# Score: 1425.0
# 
#
#=======================================

BSNT_03242___      1 TTGAAGCTGCGCATTTTTTCA---ATCATGGCC--AGTTTGATTTTGCTT     45
                     |||||..|.||..||.||.||   ||.||||||  .||.||     .||.
BL03305___ypm      1 TTGAACATACGTTTTATTACAGTCATGATGGCCCTCGTCTG-----TCTG     45

BSNT_03242___     46 CTTACTGCGTGTACGAGCATACGTACATCATCTGAG-GGAAAACAAAAAG     94
                     |||.|.||.||||||                  ||| ||||..|    .|
BL03305___ypm     46 CTTTCAGCCTGTACG------------------GAGTGGAATGC----GG     73

BSNT_03242___     95 CCCATGAAACGAAAACA-----------AAAGAAC-ACATTGTCATAGCG    132
                     ....||||   ||||||           .|||..| |.||.||.||.||.
BL03305___ypm     74 GTGTTGAA---AAAACATCGGTCTCCCCTAAGCGCGATATCGTGATTGCA    120

BSNT_03242___    133 GCTGTCGGAGATTCGCTGACAGAAGGAGTCGGAGATCCCGACGGAAAG--    180
                     ||.||.||.|||||.||||||||.||.||.||.||||   |.|.||||  
BL03305___ypm    121 GCGGTGGGCGATTCTCTGACAGAGGGGGTAGGCGATC---AAGAAAAGAA    167

BSNT_03242___    181 -GGATATGTCGGCAAGGTGGCGGAT--TCT----ATCCGGTCAGATAAAC    223
                      ||.||||||||||.||||||.|||  .||    |.||||...|||    
BL03305___ypm    168 AGGCTATGTCGGCATGGTGGCCGATGAGCTTGAAAGCCGGAGCGAT----    213

BSNT_03242___    224 AAGTCAA------AACGGTCGACGTGAAAAATTATGCCGTAAAAGG----    263
                       ||.||      |||||||      ||||||||||||||.|||||    
BL03305___ypm    214 --GTGAAGTCCGTAACGGTC------AAAAATTATGCCGTTAAAGGCTCC    255

BSNT_03242___    264 -GAACCGTTCGGATGATTTATTAGAAAAACTAAAAGATAAAAAGGTTCAA    312
                      |.||.|.||.|.||.||     ||||.|.|||||||.|||.|.||.|||
BL03305___ypm    256 CGGACTGATCAGCTGCTT-----GAAAGATTAAAAGACAAAGAAGTACAA    300

BSNT_03242___    313 AAAGGCATAAAGGACGCAGATTATGTCTTTTTTACAATTGGCGGTAATGA    362
                     .|.|||.|.||.||.|||||.||..|.||.||||||||.||.||.||.||
BL03305___ypm    301 GAGGGCCTGAAAGATGCAGACTACATTTTGTTTACAATCGGGGGCAACGA    350

BSNT_03242___    363 TTTGATGAAAATCCTTCGCCAAAACTTTCTGCAATTAACAGTTGA-ACCG    411
                     ..||||||||.||.|.|||||||||||...|||.||||| |.|.| ||| 
BL03305___ypm    351 CCTGATGAAAGTCGTCCGCCAAAACTTCGCGCACTTAAC-GCTCACACC-    398

BSNT_03242___    412 TTTCAG----GAAGCGGAAAAACCGTACGAAAAGCGCTTTGAAAAAATCA    457
                     ||||.|    |||   .||||||.||..||||||||.|||...||.||  
BL03305___ypm    399 TTTCCGTGCTGAA---CAAAAACTGTTTGAAAAGCGGTTTTCGAATAT--    443

BSNT_03242___    458 TTT--CTGAAATTCGCGAGCTGAATGATCA-CGCTGAGCTGATTTATGTC    504
                     |||  |.|||||..|.||||..||.| .|| ||||||..|||||||||||
BL03305___ypm    444 TTTAGCGGAAATCAGAGAGCAAAACG-CCAGCGCTGAATTGATTTATGTC    492

BSNT_03242___    505 AGCATGTACAATCCGTTTACGTTTACATTATCAGAACT-----AAATGAA    549
                     ||||||||.||||||||||.||||||..|.||.|||||     ||.|..|
BL03305___ypm    493 AGCATGTATAATCCGTTTAAGTTTACGCTGTCTGAACTGCGGGAAGTTGA    542

BSNT_03242___    550 ATAAATGGTGTCGT-CACGGATTGGAACCATATTGCTGAAAAAGAGCTGA    598
                     ..||     ||||| .|| ||.|||||..|....||.||||||..|||| 
BL03305___ypm    543 CCAA-----GTCGTAGAC-GAATGGAATGAAGGCGCGGAAAAAAGGCTG-    585

BSNT_03242___    599 AAAAAGAT---AAACATGCAAAAATCGTTCATATCGAAGATTTGTTCAAT    645
                     ||.|||.|   .||||  |.|||||.|...||||||..|||.|.||..|.
BL03305___ypm    586 AAGAAGGTCTCCAACA--CGAAAATGGCGGATATCGCTGATATTTTTGAG    633

BSNT_03242___    646 CAAAAAAGTG----ACAGCAGCCGAATTTCTGAGGAAGATGATTTTCATC    691
                     .||.|.||.|    |.||.||    ||   ||..|||||.||.|||||||
BL03305___ypm    634 GAATACAGCGATGAAAAGAAG----AT---TGCAGAAGACGAGTTTCATC    676

BSNT_03242___    692 CTAAT-GGTACGGGTTATTCTCTTATCGCAAAGCGCGTCTATCAAGCCAT    740
                     ||||| ..|||||| ||||||.|.||.||.||.|||||.||..||...||
BL03305___ypm    677 CTAATCAATACGGG-TATTCTTTAATAGCGAAACGCGTTTACGAACAAAT    725

BSNT_03242___    741 TAAAAAAGAAGGATTACCGAAAGAGTAG    768
                     ||||||.||||...|.||...|||.||.
BL03305___ypm    726 TAAAAACGAAGACCTCCCAGCAGAATAA    753


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03242 and BL03305

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
