Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_06231 and BL03109

See DNA alignment / Visit BSNT_06231 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:12
# Commandline: needle
#    -asequence pep-align/BSNT_06231___yybR.1.5803.seq
#    -bsequence pep-align/BL03109___ydeP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06231___yybR-BL03109___ydeP.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06231___yybR-BL03109___ydeP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06231___yybR
# 2: BL03109___ydeP
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 132
# Identity:      71/132 (53.8%)
# Similarity:    89/132 (67.4%)
# Gaps:           9/132 ( 6.8%)
# Score: 369.5
# 
#
#=======================================

BSNT_06231___      1 MSGKKN----IYPNKEGCPVEFTLDVIGGKWKGILFYHMIDGKKRFNEFR     46
                       .||:    ..|:...||||.|:|:||||||.::.||:||.||||||.|
BL03109___yde      1 --MKKHPAACEAPDGYSCPVEATIDIIGGKWKSVILYHLIDDKKRFNELR     48

BSNT_06231___     47 RICPSITQRMLTLQLRELEADGIVHREVYQQVPPKVEYSLTEFGRTLEPI     96
                     |:.|.:|||||||||||||.||||.|.:|:||||||||||||||:||.||
BL03109___yde     49 RLIPGVTQRMLTLQLRELERDGIVCRTIYKQVPPKVEYSLTEFGKTLIPI     98

BSNT_06231___     97 VLQMKEWGESNRDVLESYRSNGLLKDQQK---    125
                     :.||..||.|....::..|......::.:   
BL03109___yde     99 IRQMMNWGTSYAGKIKEARQRSAAAEKLESQG    130


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