Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06231 and BL03109
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:12
# Commandline: needle
# -asequence dna-align/BSNT_06231___yybR.1.5803.seq
# -bsequence dna-align/BL03109___ydeP.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06231___yybR-BL03109___ydeP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06231___yybR-BL03109___ydeP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06231___yybR
# 2: BL03109___ydeP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 437
# Identity: 252/437 (57.7%)
# Similarity: 252/437 (57.7%)
# Gaps: 103/437 (23.6%)
# Score: 651.5
#
#
#=======================================
BSNT_06231___ 1 ATGAGTGGAAAAA--------AGAATATATACCCGAACAA--AGAAGG-- 38
|||| ||||| ||.|| .||||..| .||.||
BL03109___yde 1 ATGA----AAAAACATCCGGCAGCAT------GCGAAGCACCGGACGGTT 40
BSNT_06231___ 39 ----CTGTCCAGTTGAATTTACTCTAGATGTCATTGGCGGAAAGTGGAAA 84
.|||||.||.|||...||..|.|||.||||.|||||.||.||||||
BL03109___yde 41 ATTCATGTCCGGTGGAAGCAACGATCGATATCATCGGCGGCAAATGGAAA 90
BSNT_06231___ 85 GGAATTCTTTTTTATCACATGATAGATGGCAAGAAACGATTTAATGAGTT 134
.|..|..||.|.||||||.||||.||||..||.|||||.||||||||..|
BL03109___yde 91 AGCGTCATTCTGTATCACTTGATCGATGATAAAAAACGCTTTAATGAACT 140
BSNT_06231___ 135 TCGGCG---AATCTGCCCGAGTATTACTCAAAGAATGCTTACTCTTCAGC 181
.||||| || |.|||| |..|.|||||..|.|||||.||.||.||||
BL03109___yde 141 GCGGCGCTTAA--TTCCCG-GCGTGACTCAGCGGATGCTGACCCTCCAGC 187
BSNT_06231___ 182 TGAGGGAGCTGGAAGCG-GACGGCATCG--TGCATCGTGAGGTTTATCAA 228
|..|.|||||.| |||| |||||||||| ||| |||....||||..||
BL03109___yde 188 TTCGAGAGCTTG-AGCGCGACGGCATCGTCTGC--CGTACAATTTACAAA 234
BSNT_06231___ 229 CAGGTGCCGCCCAAGGTTGAGTACTCTCTGACGGAATTCGGGCGA-ACGC 277
|||||.||.||.||.||.||||||..|.|.||.||.||| |||.| ||||
BL03109___yde 235 CAGGTTCCTCCGAAAGTCGAGTACAGTTTAACCGAGTTC-GGCAAGACGC 283
BSNT_06231___ 278 TTGA-ACCGATTGTTTTGCAAATGAAAGAATGGGGAGAA--TCCAACAGA 324
||| .|||||..|...||||||| |.||||.||| ||| |||.||
BL03109___yde 284 -TGATCCCGATCATCCGGCAAATG-ATGAATTGGG-GAACGTCCTAC--- 327
BSNT_06231___ 325 GACGTGCTGG---AATCTTATCGTTCGAA-------CGGCTTACTGAAGG 364
||.|| |||| || ||.| ||.|
BL03109___yde 328 -----GCCGGCAAAATC----------AAGGAAGCGCGCC------AAAG 356
BSNT_06231___ 365 ATCAGCA------GAAATAG----------------- 378
|||.||| ||||.|.
BL03109___yde 357 ATCGGCAGCCGCTGAAAAACTGGAATCGCAAGGCTAA 393
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