Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06231 and BL03109

See Amino acid alignment / Visit BSNT_06231 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:12
# Commandline: needle
#    -asequence dna-align/BSNT_06231___yybR.1.5803.seq
#    -bsequence dna-align/BL03109___ydeP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06231___yybR-BL03109___ydeP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06231___yybR-BL03109___ydeP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06231___yybR
# 2: BL03109___ydeP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 437
# Identity:     252/437 (57.7%)
# Similarity:   252/437 (57.7%)
# Gaps:         103/437 (23.6%)
# Score: 651.5
# 
#
#=======================================

BSNT_06231___      1 ATGAGTGGAAAAA--------AGAATATATACCCGAACAA--AGAAGG--     38
                     ||||    |||||        ||.||      .||||..|  .||.||  
BL03109___yde      1 ATGA----AAAAACATCCGGCAGCAT------GCGAAGCACCGGACGGTT     40

BSNT_06231___     39 ----CTGTCCAGTTGAATTTACTCTAGATGTCATTGGCGGAAAGTGGAAA     84
                         .|||||.||.|||...||..|.|||.||||.|||||.||.||||||
BL03109___yde     41 ATTCATGTCCGGTGGAAGCAACGATCGATATCATCGGCGGCAAATGGAAA     90

BSNT_06231___     85 GGAATTCTTTTTTATCACATGATAGATGGCAAGAAACGATTTAATGAGTT    134
                     .|..|..||.|.||||||.||||.||||..||.|||||.||||||||..|
BL03109___yde     91 AGCGTCATTCTGTATCACTTGATCGATGATAAAAAACGCTTTAATGAACT    140

BSNT_06231___    135 TCGGCG---AATCTGCCCGAGTATTACTCAAAGAATGCTTACTCTTCAGC    181
                     .|||||   ||  |.|||| |..|.|||||..|.|||||.||.||.||||
BL03109___yde    141 GCGGCGCTTAA--TTCCCG-GCGTGACTCAGCGGATGCTGACCCTCCAGC    187

BSNT_06231___    182 TGAGGGAGCTGGAAGCG-GACGGCATCG--TGCATCGTGAGGTTTATCAA    228
                     |..|.|||||.| |||| ||||||||||  |||  |||....||||..||
BL03109___yde    188 TTCGAGAGCTTG-AGCGCGACGGCATCGTCTGC--CGTACAATTTACAAA    234

BSNT_06231___    229 CAGGTGCCGCCCAAGGTTGAGTACTCTCTGACGGAATTCGGGCGA-ACGC    277
                     |||||.||.||.||.||.||||||..|.|.||.||.||| |||.| ||||
BL03109___yde    235 CAGGTTCCTCCGAAAGTCGAGTACAGTTTAACCGAGTTC-GGCAAGACGC    283

BSNT_06231___    278 TTGA-ACCGATTGTTTTGCAAATGAAAGAATGGGGAGAA--TCCAACAGA    324
                      ||| .|||||..|...||||||| |.||||.||| |||  |||.||   
BL03109___yde    284 -TGATCCCGATCATCCGGCAAATG-ATGAATTGGG-GAACGTCCTAC---    327

BSNT_06231___    325 GACGTGCTGG---AATCTTATCGTTCGAA-------CGGCTTACTGAAGG    364
                          ||.||   ||||          ||       ||.|      ||.|
BL03109___yde    328 -----GCCGGCAAAATC----------AAGGAAGCGCGCC------AAAG    356

BSNT_06231___    365 ATCAGCA------GAAATAG-----------------    378
                     |||.|||      ||||.|.                 
BL03109___yde    357 ATCGGCAGCCGCTGAAAAACTGGAATCGCAAGGCTAA    393


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