Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01332 and BL03088

See DNA alignment / Visit BSNT_01332 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:51
# Commandline: needle
#    -asequence pep-align/BSNT_01332___yfjS.1.5803.seq
#    -bsequence pep-align/BL03088___pdaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01332___yfjS-BL03088___pdaA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01332___yfjS-BL03088___pdaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01332___yfjS
# 2: BL03088___pdaA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 263
# Identity:     198/263 (75.3%)
# Similarity:   234/263 (89.0%)
# Gaps:           0/263 ( 0.0%)
# Score: 1094.0
# 
#
#=======================================

BSNT_01332___      1 MKWMCSICCAAVLLAGGAAQAEAVPNEPINWGFKRSVNHQPPDAGKQLNS     50
                     ||.:|:|||..:|....:..|||:.|:.|:|||.:|.||||.|||::|.:
BL03088___pda      1 MKRICAICCGFLLTLAFSGNAEAISNKAIHWGFSKSKNHQPADAGQELTN     50

BSNT_01332___     51 LIEKYDAFYLGNTKEKTIYLTFDNGYENGYTPKVLDVLKKHRVTGTFFVT    100
                     |:::||||||||||||||||||||||||||||:|||||||..|...||||
BL03088___pda     51 LLQQYDAFYLGNTKEKTIYLTFDNGYENGYTPQVLDVLKKQNVKAAFFVT    100

BSNT_01332___    101 GHFVKDQPQLIKRMSDEGHIIGNHSFHHPDLTTKTADQIQDELDSVNEEV    150
                     ||||||||:|||||::|||||||||:|||||||||:..||:||:||:|||
BL03088___pda    101 GHFVKDQPELIKRMAEEGHIIGNHSYHHPDLTTKTSRVIQEELESVDEEV    150

BSNT_01332___    151 YKITGKQDNLYLRPPRGVFSEYVLKETKRLGYQTVFWSVAFVDWKINNQK    200
                     |||||:::|||||||||:|||.||:|||:||||||||||||||||||.||
BL03088___pda    151 YKITGEKNNLYLRPPRGIFSERVLEETKKLGYQTVFWSVAFVDWKINAQK    200

BSNT_01332___    201 GKKYAYDHMIKQAHPGAIYLLHTVSRDNAEALDDAITDLKKQGYTFKSID    250
                     |.:||||:|:|||||||||||||||||||||||.|||||||:||||||:|
BL03088___pda    201 GWRYAYDNMMKQAHPGAIYLLHTVSRDNAEALDQAITDLKKEGYTFKSLD    250

BSNT_01332___    251 DLMFEKEMKMPSL    263
                     ||||||.|.:.:|
BL03088___pda    251 DLMFEKSMMLETL    263


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.