Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01332 and BL03088

See Amino acid alignment / Visit BSNT_01332 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:51
# Commandline: needle
#    -asequence dna-align/BSNT_01332___yfjS.1.5803.seq
#    -bsequence dna-align/BL03088___pdaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01332___yfjS-BL03088___pdaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01332___yfjS-BL03088___pdaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01332___yfjS
# 2: BL03088___pdaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 819
# Identity:     591/819 (72.2%)
# Similarity:   591/819 (72.2%)
# Gaps:          54/819 ( 6.6%)
# Score: 2065.0
# 
#
#=======================================

BSNT_01332___      1 ATGAAGTGGATGTGTTCAATATGCTGCG----CCGCCGTATTGCT--TGC     44
                     |||||..|.||.|||.|.||||||||||    ||       ||||  .||
BL03088___pda      1 ATGAAACGAATCTGTGCCATATGCTGCGGATTCC-------TGCTGACGC     43

BSNT_01332___     45 CGGAGGT--GCAGCACAGGCGGAAGCGGTGCCGAATGAGCCGATTAATTG     92
                     .||.|.|  ||.||| |.||.||||||.|..|.||..||.||||..||||
BL03088___pda     44 TGGCGTTCAGCGGCA-ATGCTGAAGCGATTTCCAACAAGGCGATCCATTG     92

BSNT_01332___     93 GGGCTTT--AAACGAAGTGTCAATCATCAGCCGCCAGATGCCGGG--AAG    138
                     |||.|||  |||  |||....||.|||||||||.|||||| ||||  |||
BL03088___pda     93 GGGTTTTTCAAA--AAGCAAAAACCATCAGCCGGCAGATG-CGGGTCAAG    139

BSNT_01332___    139 CAGCTG---AACAGTTTAATTGAAAAATATGACGCGTTTTATTTAGGGAA    185
                      |||||   |||..||||   .|..|.||.|||||.||||||||.||.||
BL03088___pda    140 -AGCTGACCAACCTTTTA---CAGCAGTACGACGCCTTTTATTTGGGCAA    185

BSNT_01332___    186 TACAAAGGAAAAAACGATTTACTTAACGTTTGATAACGGATATGAAAATG    235
                     .|||||||||||||||||.||..|.||.|||||||||||.||||||||.|
BL03088___pda    186 CACAAAGGAAAAAACGATCTATCTGACCTTTGATAACGGCTATGAAAACG    235

BSNT_01332___    236 GCTATACGCCAAAAGTGCTTGATGTCTTAAAAAAACATCGCGTAACAGGA    285
                     ||||.||.||..|.|||||.|||||..|.||||||||...|||.|.||..
BL03088___pda    236 GCTACACCCCTCAGGTGCTCGATGTTCTGAAAAAACAAAACGTCAAAGCG    285

BSNT_01332___    286 ACGTTTTTTGTCACCGGGCATTTCGTAAAGGACCAGCCTCAGCTGATCAA    335
                     .|.||||||||.||.||.|||||.||.||.||.|||||..||||||||||
BL03088___pda    286 GCCTTTTTTGTGACGGGCCATTTTGTCAAAGATCAGCCGGAGCTGATCAA    335

BSNT_01332___    336 ACGAATGTCAGATGAGGGCCATATTATCGGCAACCATTCCTTTCACCATC    385
                     .||||||.|.||.|||||.|||||.|||||.||.|||||.|.||||||||
BL03088___pda    336 GCGAATGGCCGAGGAGGGGCATATCATCGGGAATCATTCATATCACCATC    385

BSNT_01332___    386 CGGATTTAACGACAAAAAC-AGCTG-ATCAGATTCAGGATGAACTAGATT    433
                     |||||.|.|||||.||||| |||.| .||  |||||.||.|||.|.||.|
BL03088___pda    386 CGGATCTGACGACGAAAACAAGCCGCGTC--ATTCAAGAGGAATTGGAAT    433

BSNT_01332___    434 CAGTCAACGAAGAGGTTTATAAAATTAC--GGGAAAGCAGGACAATCTGT    481
                     |.|||.|.||.||||||||.|||||.||  |.||||  |..||||.||.|
BL03088___pda    434 CGGTCGATGAGGAGGTTTACAAAATCACAGGCGAAA--AAAACAACCTCT    481

BSNT_01332___    482 ACTTGCGTCCGCCGCGTGGCGTGTTCAGTGAGTACGTACTGAAAGAAACG    531
                     ||.||.|.|||||.||.|||.|.|||||.|||...||.||..||||||||
BL03088___pda    482 ACCTGAGACCGCCTCGGGGCATTTTCAGCGAGCGGGTGCTCGAAGAAACG    531

BSNT_01332___    532 AAACGCCTCGGCTATCAAACCGTTTTCTGGTCGGTCGCTTTTGTTGATTG    581
                     |||...||||||||||||||.||.||||||||.||.||||||||.|||||
BL03088___pda    532 AAAAAGCTCGGCTATCAAACGGTATTCTGGTCTGTTGCTTTTGTCGATTG    581

BSNT_01332___    582 GAAAATCAACAACCAAAAGGGGAAGAAATATGCCTACGATCATATGATTA    631
                     |||||||||...||||||.|||..|...|||||.|||||..|||||||.|
BL03088___pda    582 GAAAATCAATGCCCAAAAAGGGTGGCGCTATGCGTACGACAATATGATGA    631

BSNT_01332___    632 AGCAGGCGCACCCGGGAGCCATTTACCTGCTGCACACCGTATCAAGGGAC    681
                     |.|||||.|||||.||.|||||.||.|||||.||||||||.||.||.|||
BL03088___pda    632 AACAGGCTCACCCCGGCGCCATCTATCTGCTTCACACCGTCTCGAGAGAC    681

BSNT_01332___    682 AATGCTGAAGCACTGGATGATGCGATTACAGATCTGAAAAAACAGGGCTA    731
                     |||||.|||||.||.|||.|.|||||.||.||..||||||||.|.||.||
BL03088___pda    682 AATGCCGAAGCGCTTGATCAGGCGATCACCGACTTGAAAAAAGAAGGTTA    731

BSNT_01332___    732 CACTTTTAAAAGCATTGATGATCTGATGTTTGAGAAAGAAATGAAGATGC    781
                     .||.|||||||||.|.|||||.|||||||||||.|||...||||      
BL03088___pda    732 TACATTTAAAAGCCTCGATGACCTGATGTTTGAAAAATCTATGA------    775

BSNT_01332___    782 CGTCCTTGTAA--------    792
                       |.||||..|        
BL03088___pda    776 --TGCTTGAGACCCTTTGA    792


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01332 and BL03088

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
