Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01634 and BL02886

See DNA alignment / Visit BSNT_01634 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:06
# Commandline: needle
#    -asequence pep-align/BSNT_01634___yhdJ.1.5803.seq
#    -bsequence pep-align/BL02886___yhdJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01634___yhdJ-BL02886___yhdJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01634___yhdJ-BL02886___yhdJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01634___yhdJ
# 2: BL02886___yhdJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 155
# Identity:      72/155 (46.5%)
# Similarity:    96/155 (61.9%)
# Gaps:          13/155 ( 8.4%)
# Score: 363.0
# 
#
#=======================================

BSNT_01634___      1 MIIVTKGKGIEKMIHMKQLTSKEEWAESYPIMSELRTELDIETYLQRLEA     50
                                 |:..::|..:.|..|.||||.:||..||..::|:.::.
BL02886___yhd      1 ------------MLDYRELHCETELKEVYPIMKQLRPHLDETSFLELVKE     38

BSNT_01634___     51 CVQKESYMLFALYENTAIRALCGALPRVSIHKGEHLWIADLVTTAPCRSK    100
                     ..:.|||.|||||:.....||.|.|||||:::|.|:|:|||||....|||
BL02886___yhd     39 AREAESYTLFALYDGDIPVALAGFLPRVSLNQGRHVWVADLVTCEKHRSK     88

BSNT_01634___    101 GYGKMLLDYASDWARKAGLGFVSLSSGLQRKDAHRFYTDKMGFTIESYLF    150
                     ||||.||....:||:..||..::|||||||.||||||.:|||:...||||
BL02886___yhd     89 GYGKKLLGAVEEWAKGNGLASIALSSGLQRADAHRFYEEKMGYEKASYLF    138

BSNT_01634___    151 RKPV-    154
                     ||.: 
BL02886___yhd    139 RKALK    143


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.