Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01634 and BL02886

See Amino acid alignment / Visit BSNT_01634 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:06
# Commandline: needle
#    -asequence dna-align/BSNT_01634___yhdJ.1.5803.seq
#    -bsequence dna-align/BL02886___yhdJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01634___yhdJ-BL02886___yhdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01634___yhdJ-BL02886___yhdJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01634___yhdJ
# 2: BL02886___yhdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 535
# Identity:     272/535 (50.8%)
# Similarity:   272/535 (50.8%)
# Gaps:         173/535 (32.3%)
# Score: 616.0
# 
#
#=======================================

BSNT_01634___      1 ----ATGATCATTGTAACGAAAGGAAAGGGGATTGAGAAGATGATCCA-T     45
                         .||||.||              ||||.||||           || |
BL02886___yhd      1 TTGCTTGATTAT--------------AGGGAATTG-----------CATT     25

BSNT_01634___     46 ATGAAACAATTAACCTCGAAAGAAGAATGGGCTGAGTCGTATCCGATTAT     95
                     .|||||||   .|.|||     |||.|       |||| ||||||||.||
BL02886___yhd     26 GTGAAACA---GAGCTC-----AAGGA-------AGTC-TATCCGATCAT     59

BSNT_01634___     96 GAGTGAATTGAGAACAG----------AACTGGATATAGAGACGTATTT-    134
                     ||          |||||          |..|||||   ||.||||.||| 
BL02886___yhd     60 GA----------AACAGCTCCGGCCCCATTTGGAT---GAAACGTCTTTT     96

BSNT_01634___    135 ----------ACAAAGGCTTGAAGC-CTGTGTGCAGAAAGAATCGTATAT    173
                               .||||     ||||| |.|...||.|||||    .||.|.
BL02886___yhd     97 TTGGAGCTCGTCAAA-----GAAGCTCGGGAGGCTGAAAG----CTACAC    137

BSNT_01634___    174 GCTGTTTGCCTTATATGA-----AAATACAGCAATCAGAGCGCTGTG--C    216
                     |.|.|||||..|.||.||     |.||       ||.|...|||.||  |
BL02886___yhd    138 GTTATTTGCGCTGTACGACGGTGATAT-------TCCGGTGGCTTTGGCC    180

BSNT_01634___    217 GGGGCTCTGCCGAGAGTTTCCATTCATAAAGGAGAGCACTTGTGGATTGC    266
                     ||...|.|||||||.|||||..|..|..||||....||..|.|||.|.||
BL02886___yhd    181 GGCTTTTTGCCGAGGGTTTCTTTGAACCAAGGCCGTCATGTTTGGGTAGC    230

BSNT_01634___    267 GGATCTTGTTAC--------AACGGCACCTTGCCGATCAAAGGGATACGG    308
                     |||.||.||.||        |||        .|||.|||||.||.||.||
BL02886___yhd    231 GGACCTGGTGACGTGTGAAAAAC--------ACCGTTCAAAAGGCTATGG    272

BSNT_01634___    309 CAAAATGCTTTTGGATTATGC-CT----CAGACTGGGCGAGAAAAGCCGG    353
                     .||.|.||||     |||.|| ||    .|||.|||||   .||||  ||
BL02886___yhd    273 AAAGAAGCTT-----TTAGGCGCTGTTGAAGAGTGGGC---CAAAG--GG    312

BSNT_01634___    354 ACTCGGTTTTG--TCAGTC----TTTCATCTGGCCTGCAGCGTAAAGACG    397
                     | .|||.||.|  |||.||    |.|||||.|||.|||||||...|||||
BL02886___yhd    313 A-ACGGATTGGCTTCAATCGCTTTATCATCAGGCTTGCAGCGGGCAGACG    361

BSNT_01634___    398 CACATCGATTTTATACAGATAAAATGGGTTTTACTAT-AGAAAG------    440
                     |.||.||.|||||...|||.||||||||     .||| |.||||      
BL02886___yhd    362 CTCACCGTTTTTACGAAGAGAAAATGGG-----GTATGAAAAAGCGAGCT    406

BSNT_01634___    441 --TTATTT------GTTCCGAAA--ACCGGTATAA    465
                       .|||||      |.||.||||  |         
BL02886___yhd    407 ACCTATTTCGCAAGGCTCTGAAATGA---------    432


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.