Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01634 and BL02886
See
Amino acid alignment /
Visit
BSNT_01634 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_01634___yhdJ.1.5803.seq
# -bsequence dna-align/BL02886___yhdJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01634___yhdJ-BL02886___yhdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01634___yhdJ-BL02886___yhdJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01634___yhdJ
# 2: BL02886___yhdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 535
# Identity: 272/535 (50.8%)
# Similarity: 272/535 (50.8%)
# Gaps: 173/535 (32.3%)
# Score: 616.0
#
#
#=======================================
BSNT_01634___ 1 ----ATGATCATTGTAACGAAAGGAAAGGGGATTGAGAAGATGATCCA-T 45
.||||.|| ||||.|||| || |
BL02886___yhd 1 TTGCTTGATTAT--------------AGGGAATTG-----------CATT 25
BSNT_01634___ 46 ATGAAACAATTAACCTCGAAAGAAGAATGGGCTGAGTCGTATCCGATTAT 95
.||||||| .|.||| |||.| |||| ||||||||.||
BL02886___yhd 26 GTGAAACA---GAGCTC-----AAGGA-------AGTC-TATCCGATCAT 59
BSNT_01634___ 96 GAGTGAATTGAGAACAG----------AACTGGATATAGAGACGTATTT- 134
|| ||||| |..||||| ||.||||.|||
BL02886___yhd 60 GA----------AACAGCTCCGGCCCCATTTGGAT---GAAACGTCTTTT 96
BSNT_01634___ 135 ----------ACAAAGGCTTGAAGC-CTGTGTGCAGAAAGAATCGTATAT 173
.|||| ||||| |.|...||.||||| .||.|.
BL02886___yhd 97 TTGGAGCTCGTCAAA-----GAAGCTCGGGAGGCTGAAAG----CTACAC 137
BSNT_01634___ 174 GCTGTTTGCCTTATATGA-----AAATACAGCAATCAGAGCGCTGTG--C 216
|.|.|||||..|.||.|| |.|| ||.|...|||.|| |
BL02886___yhd 138 GTTATTTGCGCTGTACGACGGTGATAT-------TCCGGTGGCTTTGGCC 180
BSNT_01634___ 217 GGGGCTCTGCCGAGAGTTTCCATTCATAAAGGAGAGCACTTGTGGATTGC 266
||...|.|||||||.|||||..|..|..||||....||..|.|||.|.||
BL02886___yhd 181 GGCTTTTTGCCGAGGGTTTCTTTGAACCAAGGCCGTCATGTTTGGGTAGC 230
BSNT_01634___ 267 GGATCTTGTTAC--------AACGGCACCTTGCCGATCAAAGGGATACGG 308
|||.||.||.|| ||| .|||.|||||.||.||.||
BL02886___yhd 231 GGACCTGGTGACGTGTGAAAAAC--------ACCGTTCAAAAGGCTATGG 272
BSNT_01634___ 309 CAAAATGCTTTTGGATTATGC-CT----CAGACTGGGCGAGAAAAGCCGG 353
.||.|.|||| |||.|| || .|||.||||| .|||| ||
BL02886___yhd 273 AAAGAAGCTT-----TTAGGCGCTGTTGAAGAGTGGGC---CAAAG--GG 312
BSNT_01634___ 354 ACTCGGTTTTG--TCAGTC----TTTCATCTGGCCTGCAGCGTAAAGACG 397
| .|||.||.| |||.|| |.|||||.|||.|||||||...|||||
BL02886___yhd 313 A-ACGGATTGGCTTCAATCGCTTTATCATCAGGCTTGCAGCGGGCAGACG 361
BSNT_01634___ 398 CACATCGATTTTATACAGATAAAATGGGTTTTACTAT-AGAAAG------ 440
|.||.||.|||||...|||.|||||||| .||| |.||||
BL02886___yhd 362 CTCACCGTTTTTACGAAGAGAAAATGGG-----GTATGAAAAAGCGAGCT 406
BSNT_01634___ 441 --TTATTT------GTTCCGAAA--ACCGGTATAA 465
.||||| |.||.|||| |
BL02886___yhd 407 ACCTATTTCGCAAGGCTCTGAAATGA--------- 432
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.