Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_05478 and BL02440

See DNA alignment / Visit BSNT_05478 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:37
# Commandline: needle
#    -asequence pep-align/BSNT_05478___rbsD.1.5803.seq
#    -bsequence pep-align/BL02440___rbsD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05478___rbsD-BL02440___rbsD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05478___rbsD-BL02440___rbsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05478___rbsD
# 2: BL02440___rbsD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 131
# Identity:      86/131 (65.6%)
# Similarity:   102/131 (77.9%)
# Gaps:           0/131 ( 0.0%)
# Score: 431.0
# 
#
#=======================================

BSNT_05478___      1 MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDGVLKIDLSLKPGLPA     50
                     ||||||||||:||:||||||||.|||||||||||.||.||||:|..|.|.
BL02440___rbs      1 MKKHGILNSHIAKLLADLGHTDTIVIADAGLPVPPGVPKIDLALTLGTPG     50

BSNT_05478___     51 FQDTAAVLAEEMAVEKVIAAAEIKASNQENARFLENLFSEQEIEYLSHEE    100
                     |::...::|:||.||||.||.||::.|...|.||:..||.|:|:|:.||.
BL02440___rbs     51 FREVTKLIADEMVVEKVTAAQEIESVNPGQAAFLKAEFSNQKIDYIPHEA    100

BSNT_05478___    101 FKLLTKEAKAVIRTGEFTQYANCILQAGVLF    131
                     ||..|.:|||||||||.|.||||||.|||:|
BL02440___rbs    101 FKKATSQAKAVIRTGEATPYANCILHAGVIF    131


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.