Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05478 and BL02440

See Amino acid alignment / Visit BSNT_05478 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:37
# Commandline: needle
#    -asequence dna-align/BSNT_05478___rbsD.1.5803.seq
#    -bsequence dna-align/BL02440___rbsD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05478___rbsD-BL02440___rbsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05478___rbsD-BL02440___rbsD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05478___rbsD
# 2: BL02440___rbsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 431
# Identity:     276/431 (64.0%)
# Similarity:   276/431 (64.0%)
# Gaps:          70/431 (16.2%)
# Score: 815.0
# 
#
#=======================================

BSNT_05478___      1 ATGAAAAAACACGGTATACTGAACAGCCATCTTGCCAAGATT-TTAGCAG     49
                     ||||||||||||||.|||.|.|||||||||.|.| |||.||| .|.||.|
BL02440___rbs      1 ATGAAAAAACACGGAATATTAAACAGCCATATCG-CAAAATTGCTGGCCG     49

BSNT_05478___     50 ACCTTGGCCACACTGATAAAATTGTCATCGCGGATGCCGGACTGCCGGTT     99
                     |.||.||.||.||.||||..||.|||||||||||.|||||.|||||.|||
BL02440___rbs     50 ATCTCGGGCATACCGATACCATCGTCATCGCGGACGCCGGTCTGCCCGTT     99

BSNT_05478___    100 CCCGACGGCGTTTTGAAAATTGATCTTTCACTGAAGCCGGGCCTT-----    144
                     ||...||||||....|||||.|||||..||||||       |.||     
BL02440___rbs    100 CCGCCCGGCGTCCCCAAAATCGATCTCGCACTGA-------CATTGGGTA    142

BSNT_05478___    145 ---CCGGCTTTCCAAGA---TAC--AGCGGCAGTACTGGCTGAGGAAATG    186
                        ||||.||| |.|||   |||  |||     |..|.||.||.||||||
BL02440___rbs    143 CGCCCGGATTT-CGAGAGGTTACAAAGC-----TCATCGCCGATGAAATG    186

BSNT_05478___    187 GCGGTCGAAAAAGTCATTGCTGCAGC---TGAAATA-AAAGCATCCAAT-    231
                     |..|||||||||||.|   |.|||||   .|||||| |||||.| |||| 
BL02440___rbs    187 GTTGTCGAAAAAGTGA---CGGCAGCCCAAGAAATAGAAAGCGT-CAATC    232

BSNT_05478___    232 CAGGAGAATGCGAGATTTCTAGAAAATC----TTTTCTCTGAA--CAAGA    275
                     |.||..|| ||...||||.|  ||||.|    |||||    ||  |||.|
BL02440___rbs    233 CCGGTCAA-GCCGCATTTTT--AAAAGCGGAATTTTC----AAACCAAAA    275

BSNT_05478___    276 GATTGAATACCTTTCTCACGAGGAGTTTAAGCTGCTGACAAAAG------    319
                     ||||||.||..|..|.|||||.|..||.|          |||||      
BL02440___rbs    276 GATTGACTATATCCCGCACGAAGCATTCA----------AAAAGGCAACG    315

BSNT_05478___    320 ----AAGCAAAGGCAGTCATAAGAACAGGAGAATTCACACAGTATGCCAA    365
                         |.||.||.||.|||||..|.|||||.|||...||.|..|||||.||
BL02440___rbs    316 AGCCAGGCGAAAGCGGTCATTCGCACAGGGGAAGCAACGCCTTATGCAAA    365

BSNT_05478___    366 CTGCATCCTGCAGGCGGGTGTGCTTTTCTAG    396
                     .||||||.||||.|||||.|||.|.||.|||
BL02440___rbs    366 TTGCATCTTGCACGCGGGAGTGATCTTTTAG    396


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