Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05474 and BL02438
See
DNA alignment /
Visit
BSNT_05474 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence pep-align/BSNT_05474___rbsR.1.5803.seq
# -bsequence pep-align/BL02438___rbsR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05474___rbsR-BL02438___rbsR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05474___rbsR-BL02438___rbsR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05474___rbsR
# 2: BL02438___rbsR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 329
# Identity: 219/329 (66.6%)
# Similarity: 271/329 (82.4%)
# Gaps: 3/329 ( 0.9%)
# Score: 1141.0
#
#
#=======================================
BSNT_05474___ 1 MATIKDVAGAAGVSVATVSRVLNDNGYVHEVTRTRVIAAMAKLNYYPNEV 50
||||||||.||.|||||||||||:.|||||.||.||:.||.:|||:||||
BL02438___rbs 1 MATIKDVALAAKVSVATVSRVLNETGYVHEDTRARVLKAMEELNYHPNEV 50
BSNT_05474___ 51 ARSLYKRESRLIGLLLPDITNPFFPQLARGAEDELNREGYRLIFGNSDEE 100
||||||||||||||||||||||||||||||.|||::|.|:|||||||||.
BL02438___rbs 51 ARSLYKRESRLIGLLLPDITNPFFPQLARGVEDEIHRLGFRLIFGNSDEN 100
BSNT_05474___ 101 LKKELEYLQTFKQNHVAGIIAATNYPDLEEYSGMNYPVVFLDRTLEGAPS 150
|:|||:|:||||||||.|:|:||||||...|..::.|:||||||.|.||:
BL02438___rbs 101 LEKELDYMQTFKQNHVVGVISATNYPDAPNYQDLSMPIVFLDRTGENAPA 150
BSNT_05474___ 151 VSSDGYTGGKLAAQAIIHGKSQRITLLRGPAHLPTAQDRFNGALEILKQA 200
|.:|...||::||..:|...::||||::|||||.||:|||||||::|..|
BL02438___rbs 151 VFADSREGGRIAAAEMIKRNAKRITLIKGPAHLQTARDRFNGALDVLSGA 200
BSNT_05474___ 201 EVEFQVIETASFSIKDAQSMAKELFAAYPATDGVIASNDIQAAAVLHEAL 250
:::|.|::|.:||..:||..|.|||..||.||||||||||.|.|||||||
BL02438___rbs 201 DIDFHVMKTETFSFPEAQKRAAELFGTYPETDGVIASNDIVATAVLHEAL 250
BSNT_05474___ 251 RRGKNVPEDIQIIGYDDIPQSGLLFPPLSTIKQPAYDMGREAAKLLLGII 300
:|...||:::||||:||||||.||||.||||:||||:||:|||||||.::
BL02438___rbs 251 KRKIKVPDELQIIGFDDIPQSELLFPSLSTIRQPAYEMGKEAAKLLLRLM 300
BSNT_05474___ 301 KKQPLAETAIQMPVTYIGRKTTRKEDYDA 329
|.:.:.::|:||||.:|.|:||||.:
BL02438___rbs 301 KNEYIEQSAVQMPVAFIERQTTRKAE--- 326
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.