Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05474 and BL02438
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence dna-align/BSNT_05474___rbsR.1.5803.seq
# -bsequence dna-align/BL02438___rbsR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05474___rbsR-BL02438___rbsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05474___rbsR-BL02438___rbsR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05474___rbsR
# 2: BL02438___rbsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1055
# Identity: 696/1055 (66.0%)
# Similarity: 696/1055 (66.0%)
# Gaps: 139/1055 (13.2%)
# Score: 2201.5
#
#
#=======================================
BSNT_05474___ 1 TTGGCTACAATTAAAGATGTCGCCGGAGCGGCGGGCGTTTCAGTTGCGAC 50
||||||||.||||||||.|||||....||.||....||.||.||.||.||
BL02438___rbs 1 TTGGCTACGATTAAAGACGTCGCACTTGCTGCAAAAGTATCTGTCGCTAC 50
BSNT_05474___ 51 GGTTTCCCGCGTCCTGAATGATAACGGCTATGTACACGAAGTAACGCGA- 99
|||||||||.||..|.|||||.|..||.||.||.||.|||| ||.|||
BL02438___rbs 51 GGTTTCCCGGGTATTAAATGAGACGGGATACGTTCATGAAG--ACACGAG 98
BSNT_05474___ 100 ---ACGCGTG-TCATAGCGGCGATGGCGAAG--CTGAACTATTACCCGAA 143
.|||||| |.|.| |||||| |||| |||||.||..|||||||
BL02438___rbs 99 GGCGCGCGTGCTGAAA---GCGATG--GAAGAACTGAATTACCACCCGAA 143
BSNT_05474___ 144 TGAAGTTGCCAGATCTCTATATAAAAGAGAATCCCGACTGATCGGACTTT 193
||||||.|||||.|||||.||||||||.||.|||.|||||||||||||..
BL02438___rbs 144 TGAAGTAGCCAGGTCTCTCTATAAAAGGGAGTCCAGACTGATCGGACTGC 193
BSNT_05474___ 194 TGCTCCCGGATATCACAAACCCTTTCTTCCCCCAGCTTGCCCGCGGTGCG 243
||||.|||||||||||||||||.|||||.||.||||||||||||||.|..
BL02438___rbs 194 TGCTGCCGGATATCACAAACCCGTTCTTTCCTCAGCTTGCCCGCGGCGTT 243
BSNT_05474___ 244 GAGGATGAATTGAACCGGGAAGGCTATCGCCTTATTTTCGGCAACAGTGA 293
||.|||||..|..||||....||||.|||.||.||.||.||.|||||.||
BL02438___rbs 244 GAAGATGAGATCCACCGCCTCGGCTTTCGGCTCATATTTGGAAACAGCGA 293
BSNT_05474___ 294 CGAGGAAT-TGAAAAAAGAACTTGAATACCTTCAAACCTTTAAGCAAAAT 342
.|| .||| ||.|||||||.|||||.||..|.||.||.|||||.||||||
BL02438___rbs 294 TGA-AAATCTGGAAAAAGAGCTTGATTATATGCAGACGTTTAAACAAAAT 342
BSNT_05474___ 343 CATGTCGCAGGCATTATTGCCGCAACGAATTACCCGGATCTCGAGGAATA 392
|||||.|..||..|.|||.|.||.||.|||||.||||||
BL02438___rbs 343 CATGTGGTCGGAGTCATTTCAGCGACCAATTATCCGGAT----------- 381
BSNT_05474___ 393 CAGCGGCATGAATTATC--------------CCG-TTGTTTTTCTGGACA 427
|||.|| ||||||| ||| |.||.|||||.|
BL02438___rbs 382 --GCGCCA--AATTATCAAGACTTGTCCATGCCGATCGTCTTTCTTG--- 424
BSNT_05474___ 428 GAACACTGGAAGGG-------GCTCCTTCTGT------GTCCAGTGACGG 464
||.|||.||| ||.||..|||| |..||| |.|
BL02438___rbs 425 ----ACCGGACGGGCGAGAATGCGCCGGCTGTATTTGCGGACAG---CCG 467
BSNT_05474___ 465 CTATACAGGAGGAAAGTTAGCCGCTCAGGCT---ATCATTCA--CGGAA- 508
|.| ||||||.|...|.||.|| |||| ||.| ||| .||||
BL02438___rbs 468 CGA---AGGAGGCAGAATCGCAGC---GGCTGAGATGA-TCAAGAGGAAC 510
BSNT_05474___ 509 ---AAAGCCAGCGCATTACGCTCTTGAGAGGACCCGCTCACCTGCCGACC 555
||| ||.||||||||..|.|.||||||.||||||||.|.|||.
BL02438___rbs 511 GCGAAA-----CGGATTACGCTGATTAAAGGACCGGCTCACCTTCAGACT 555
BSNT_05474___ 556 GCTCAAGACCGCTTTAATGGCGCTTTGGAAAT-CTTAAAGCAG-GCTGAA 603
||...||||||.||.||.||.||..||||..| || ||||.| ||.||.
BL02438___rbs 556 GCAAGAGACCGTTTCAACGGAGCGCTGGACGTGCT--AAGCGGAGCCGAT 603
BSNT_05474___ 604 GTTGAGTTTCAGGTCATTGAGACCGCTTCATTTTCTATTAAAGATG--CA 651
.|.||.|||||.|||||..|.||||...|||||||..||...||.| ||
BL02438___rbs 604 ATCGATTTTCACGTCATGAAAACCGAGACATTTTCATTTCCGGAAGCCCA 653
BSNT_05474___ 652 CAATCGATGGCGAAGGAGCTGTTTGCCGCTTATCCAGCGACAGATGGTGT 701
.||.|| ||||..|||||||||||.|.|.|||||.|..|||||.||.||
BL02438___rbs 654 AAAACG--GGCGGCGGAGCTGTTTGGCACATATCCGGAAACAGACGGCGT 701
BSNT_05474___ 702 AATCGCGAGTAATGATATTCAAGCCGCTGCCGTTTTACATGAAGCATTGC 751
.|||||.||.|||||.|||...||..|.||||||||.||||||||.||
BL02438___rbs 702 GATCGCAAGCAATGACATTGTGGCGACAGCCGTTTTGCATGAAGCCTT-- 749
BSNT_05474___ 752 GGCGCGGAAAA---------AACGTGCCGGAGGACATTCAAATTATCGGC 792
|||| ||.||.||.||.||..|.||.|||||||||
BL02438___rbs 750 -------AAAACGGAAGATCAAAGTTCCCGATGAACTGCAGATTATCGGC 792
BSNT_05474___ 793 TATGATGACATTCCGCAAAGCGGACTTCTGTTCCCGCCACTT--TCTACA 840
|.|||||||||.||||||||||.|.|.||.|||| ||.||| ||.||.
BL02438___rbs 793 TTTGATGACATACCGCAAAGCGAATTGCTTTTCC--CCTCTTTATCAACG 840
BSNT_05474___ 841 ATTAAACAGCCCGCATATGATATGGGAAGAGAAGCTGCCAAACTGCTTTT 890
||.|..||||||||.|||||.|||||||.|||||||||.||||||||..|
BL02438___rbs 841 ATCAGGCAGCCCGCCTATGAAATGGGAAAAGAAGCTGCAAAACTGCTGCT 890
BSNT_05474___ 891 GGGCATCATCAAAAA-----ACAGCCGCTGGCAGAAACGGCAATTCAAAT 935
..|..|.||.||||| |.| |.|.|.||.|||||.||||.||
BL02438___rbs 891 TAGATTAATGAAAAATGAATATA-----TTGAACAATCGGCAGTTCAGAT 935
BSNT_05474___ 936 GCCTGTCACCTATATAGGAAGAAAGACGACAAGAAAGGAAGATTACGATG 985
|||.||..|||.|||.|.||||.|.|||||||||||||..|| |.||
BL02438___rbs 936 GCCGGTTGCCTTTATTGAAAGACAAACGACAAGAAAGGCGGA--ATGA-- 981
BSNT_05474___ 986 CGTAA 990
BL02438___rbs 981 ----- 981
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