Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04842 and BL02163

See DNA alignment / Visit BSNT_04842 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:02
# Commandline: needle
#    -asequence pep-align/BSNT_04842___yurV.1.5803.seq
#    -bsequence pep-align/BL02163___nifU.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04842___yurV-BL02163___nifU.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04842___yurV-BL02163___nifU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04842___yurV
# 2: BL02163___nifU
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 148
# Identity:     132/148 (89.2%)
# Similarity:   138/148 (93.2%)
# Gaps:           1/148 ( 0.7%)
# Score: 686.0
# 
#
#=======================================

BSNT_04842___      1 MSFNANLDTLYRQVIMDHYKNPRNKGVLNDSIVVDMNNPTCGDRIRLTMK     50
                     ||||.|||||||||||||||||||||||||||||||||||||||||||||
BL02163___nif      1 MSFNVNLDTLYRQVIMDHYKNPRNKGVLNDSIVVDMNNPTCGDRIRLTMK     50

BSNT_04842___     51 LDGDIVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSKIFSDMMQ    100
                     :....|||||||||||||||||||||||||||||:||||.||:|||||||
BL02163___nif     51 ITDGKVEDAKFEGEGCSISMASASMMTQAIKGKDVETALQMSRIFSDMMQ    100

BSNT_04842___    101 GKEYDDSIDLGDIEALQGVSKFPARIKCATLSWKALEKGVAKQEGGN-    147
                     ||:|||||||||||||||||||||||||||||||||||||:|:...| 
BL02163___nif    101 GKDYDDSIDLGDIEALQGVSKFPARIKCATLSWKALEKGVSKENSDNE    148


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.