Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02178 and BL01936
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence pep-align/BSNT_02178___ykcC.1.5803.seq
# -bsequence pep-align/BL01936___ykcC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02178___ykcC-BL01936___ykcC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02178___ykcC-BL01936___ykcC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02178___ykcC
# 2: BL01936___ykcC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 325
# Identity: 230/325 (70.8%)
# Similarity: 270/325 (83.1%)
# Gaps: 2/325 ( 0.6%)
# Score: 1205.5
#
#
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BSNT_02178___ 1 MSRHIQYSIVVPVYNEELVIHETYQRLKEVMDQTKENYELLFVNDGSKDR 50
|.:.:.:|||||||||..|:..||.|||.|||.|.:.|||:||||||.|.
BL01936___ykc 1 MQKQVTFSIVVPVYNEAEVLQSTYDRLKTVMDSTGDPYELIFVNDGSSDD 50
BSNT_02178___ 51 SIEILREHSLIDPRVKIIDFSRNFGHQIAITAGMDYAQGNAIVVIDADLQ 100
||..|:..:..|..||.|:||||||||||||||.|||.|.||||||||||
BL01936___ykc 51 SIHTLKSLAQSDQAVKCINFSRNFGHQIAITAGTDYAAGEAIVVIDADLQ 100
BSNT_02178___ 101 DPPELILDMIEKWKEGYEVVYAVRTKRKGETFFKKQTAAMFYRLLSGMTD 150
|||||||:|.|||::|::|||||||||:|||||||||||||||:|..:||
BL01936___ykc 101 DPPELILEMAEKWRQGFDVVYAVRTKREGETFFKKQTAAMFYRILRKLTD 150
BSNT_02178___ 151 IDIPIDTGDFRLMDRKVCDEMKRLKEKNPFVRGLVSWVGFKQTAVEYVRD 200
:|||:||||||||||||.:||.:||||||||||||||:|||||||.|.|.
BL01936___ykc 151 VDIPVDTGDFRLMDRKVVNEMNKLKEKNPFVRGLVSWLGFKQTAVYYERH 200
BSNT_02178___ 201 ERLAGETKYPLKKMLKLSMDGITTFSHKPLKLASYAGILMSGAGFLYMFI 250
||||||||||||||||||:||||:||.:|||||||:||::|..||:|.||
BL01936___ykc 201 ERLAGETKYPLKKMLKLSLDGITSFSFQPLKLASYSGIVLSAIGFIYAFI 250
BSNT_02178___ 251 VLYLKLFTDSTITGWSSLIVIQLLFSGIVLLILGVIGEYIGRIYDEAKDR 300
|:.:||||.||||||||:|::|.||||.:|:|||.|||||||||||.|||
BL01936___ykc 251 VVCMKLFTTSTITGWSSMIILQCLFSGFILIILGAIGEYIGRIYDEVKDR 300
BSNT_02178___ 301 PLYIVQKSYGIESKRLYR--DQHMS 323
||||:...||.|.:|..| .:|:.
BL01936___ykc 301 PLYIIDGKYGFEEQRRARAPQRHIM 325
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