Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02178 and BL01936
See
Amino acid alignment /
Visit
BSNT_02178 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_02178___ykcC.1.5803.seq
# -bsequence dna-align/BL01936___ykcC.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02178___ykcC-BL01936___ykcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02178___ykcC-BL01936___ykcC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02178___ykcC
# 2: BL01936___ykcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1051
# Identity: 704/1051 (67.0%)
# Similarity: 704/1051 (67.0%)
# Gaps: 152/1051 (14.5%)
# Score: 2230.5
#
#
#=======================================
BSNT_02178___ 1 ATGAGCAG--ACATATTCA-ATATTCAATTGTTGTACCTGTGTATAATGA 47
|| |||| ||| |.||| ||.||||||.||.||||||||.||.||.||
BL01936___ykc 1 AT--GCAGAAACA-AGTCACATTTTCAATCGTAGTACCTGTCTACAACGA 47
BSNT_02178___ 48 AGAGCTTGTCATCCATGAA--ACCTATCAGCGCTTAAAAGAGGTCATGGA 95
||.|...||..|.|| || ||||||.|.||.||||||...||||||||
BL01936___ykc 48 AGCGGAAGTGCTTCA--AAGCACCTATGACCGATTAAAAACCGTCATGGA 95
BSNT_02178___ 96 -TCAAACGA-AG--GAAAACTACGAGCTGCTTTTTGTCAACGATGG---C 138
| ||| || ||...|||.||.|||.|||||||.|||||||| .
BL01936___ykc 96 CT----CGACAGGCGATCCCTATGAACTGATTTTTGTAAACGATGGTTCA 141
BSNT_02178___ 139 AGCAAAGACCGCAGTATTGAGATTTTAAGAGAGCACAGCCTGA--TCGAT 186
|||.|.|||.|||.| ||||..|||| |||.|
BL01936___ykc 142 AGCGATGACAGCATT------------------CACACGCTGAAGTCGCT 173
BSNT_02178___ 187 ------------CCGAG--AGTGAAAAT-TATTGATTTTTCAAGGAATTT 221
|| || ||| ||||| .||..||||.|||||.||.||
BL01936___ykc 174 TGCTCAGTCAGACC-AGGCAGT-AAAATGCATCAATTTCTCAAGAAACTT 221
BSNT_02178___ 222 TGGACACCAGATCGCCATTACGGCGGGTATGGATTATGC-ACAGGGGAAT 270
.||.||.||||||||.||||||||.||.|..||.||||| .|.||.| |.
BL01936___ykc 222 CGGTCATCAGATCGCGATTACGGCCGGCACAGACTATGCTGCCGGCG-AG 270
BSNT_02178___ 271 GCAATCGTCGTCATTGACGCCGATTTGCAGGACCCTCCTGAACTGATTTT 320
||.|||||.||.||.|||||||||||||||||.|||||||||.|||||||
BL01936___ykc 271 GCGATCGTTGTGATCGACGCCGATTTGCAGGATCCTCCTGAATTGATTTT 320
BSNT_02178___ 321 AGATATGATTGAAAAGTGGAAGGAAGGCTATGAGGTCGTGTACGCCGTGC 370
.||.|||...|||||.|||....||||||.|||.||.||.||||||||.|
BL01936___ykc 321 GGAAATGGCGGAAAAATGGCGCCAAGGCTTTGACGTTGTATACGCCGTCC 370
BSNT_02178___ 371 GGACTAAACGAAAAGGGGAAACCTTTTTCAAAAAACAAACCGCGGCTATG 420
|.||.||.|||.||||.|||||.|||||||||||.|||||.||.||.|||
BL01936___ykc 371 GCACAAAGCGAGAAGGAGAAACATTTTTCAAAAAGCAAACGGCCGCCATG 420
BSNT_02178___ 421 TTTTACCGGCTTCTCAGCGGTA----TGACAGATATTGATATCCCGATTG 466
||.||||||.||.|.|| | |.|||||..|||||||||||.|.|
BL01936___ykc 421 TTCTACCGGATTTTAAG----AAAACTTACAGACGTTGATATCCCGGTGG 466
BSNT_02178___ 467 ATACGGGGGATTTTCGCCTCATGGACAGAAAAGTCTGT-GATGAAATGAA 515
||||.||.||.||.||.|||||||||.|.||.|| .|| .||||||||||
BL01936___ykc 467 ATACAGGAGACTTCCGGCTCATGGACCGGAAGGT-GGTCAATGAAATGAA 515
BSNT_02178___ 516 GAGATTAAAAGAAAAAAATCCATTTGTCAGAGGGCTAGTCAGCTGGGTGG 565
.|...|.|||||||||||.||.||.|||.|.||.||.|||||||||.|.|
BL01936___ykc 516 CAAGCTGAAAGAAAAAAACCCGTTCGTCCGCGGTCTTGTCAGCTGGCTCG 565
BSNT_02178___ 566 GCTTTAAACAGACAGCGGTCGAGTATGTACGTG----ATGAAAGGCTTGC 611
|.||.||.||||||||.||| ||| ||||.| |.|||.|||||||
BL01936___ykc 566 GGTTCAAGCAGACAGCCGTC---TAT-TACGAGCGCCACGAACGGCTTGC 611
BSNT_02178___ 612 CGGAGAAACAAAGTACCCGCTCAAGAAAATGCTGAAGCTGTCAATGGACG 661
.||.|||||.|||||||||||.||.||||||||||||||.||..|.||||
BL01936___ykc 612 AGGGGAAACGAAGTACCCGCTGAAAAAAATGCTGAAGCTCTCGCTCGACG 661
BSNT_02178___ 662 GCATCACGACATTTTCACATAAACCGCTGAAGCTGGCAAGCTATGCGGGG 711
|||||||..|||||||...|.|.||||||||.|||||||||||..|.||.
BL01936___ykc 662 GCATCACTTCATTTTCCTTTCAGCCGCTGAAACTGGCAAGCTACTCAGGA 711
BSNT_02178___ 712 ATTTTAATGTCAGGTGCTGGAT----TTCTGTATATG--TTTATCGT--G 753
||..|..|||||| .||| || |.||||.| ||.||||| .
BL01936___ykc 712 ATCGTGCTGTCAG-----CGATCGGCTT-TATATACGCCTTCATCGTCGT 755
BSNT_02178___ 754 CTGTATCTGAAGCTATTCACAGAC-AGCACGATTACCGGCTGGTCATCAC 802
|||.| |||||||.||.|| ||| |||||.|||||.||.|||||.||
BL01936___ykc 756 CTGCA--TGAAGCTGTTTAC-GACAAGCACCATTACAGGATGGTCGTC-- 800
BSNT_02178___ 803 TTATTG-TGATC------CA--GCTCCTGTTCAGCGGCATTGTCCTTCTG 843
| ||||| || ||| ||||||||||..||.||||..|.
BL01936___ykc 801 -----GATGATCATTCTGCAATGCT--TGTTCAGCGGATTTATCCTGATC 843
BSNT_02178___ 844 ATTTTGGGCGTGATCGGCGAATATATCGGCAGAATCTACGATGAAGCCAA 893
||..|.||.|..|||||||||||.||||||.|.||.||.||.||||..||
BL01936___ykc 844 ATCCTCGGGGCAATCGGCGAATACATCGGCCGCATTTATGACGAAGTGAA 893
BSNT_02178___ 894 AGACAGGCCGCTTTA---CATCGTCCAAAAATCGTATGGAATTGAAAGTA 940
||||||||||||||| |||.|.|..|||| ||.||..||||| .|
BL01936___ykc 894 AGACAGGCCGCTTTATATCATTGACGGAAAA---TACGGGTTTGAA--GA 938
BSNT_02178___ 941 AAAG------------ACTCTATAGAGACCAGCATATGTCATAA------ 972
|.|| .||| .||||| |.||||.
BL01936___ykc 939 ACAGCGGCGGGCGCGAGCTC-------CCCAGC----GCCATATTATGTA 977
BSNT_02178___ 972 - 972
BL01936___ykc 978 G 978
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.