Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02178 and BL01936

See Amino acid alignment / Visit BSNT_02178 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:40
# Commandline: needle
#    -asequence dna-align/BSNT_02178___ykcC.1.5803.seq
#    -bsequence dna-align/BL01936___ykcC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02178___ykcC-BL01936___ykcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02178___ykcC-BL01936___ykcC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02178___ykcC
# 2: BL01936___ykcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1051
# Identity:     704/1051 (67.0%)
# Similarity:   704/1051 (67.0%)
# Gaps:         152/1051 (14.5%)
# Score: 2230.5
# 
#
#=======================================

BSNT_02178___      1 ATGAGCAG--ACATATTCA-ATATTCAATTGTTGTACCTGTGTATAATGA     47
                     ||  ||||  ||| |.||| ||.||||||.||.||||||||.||.||.||
BL01936___ykc      1 AT--GCAGAAACA-AGTCACATTTTCAATCGTAGTACCTGTCTACAACGA     47

BSNT_02178___     48 AGAGCTTGTCATCCATGAA--ACCTATCAGCGCTTAAAAGAGGTCATGGA     95
                     ||.|...||..|.||  ||  ||||||.|.||.||||||...||||||||
BL01936___ykc     48 AGCGGAAGTGCTTCA--AAGCACCTATGACCGATTAAAAACCGTCATGGA     95

BSNT_02178___     96 -TCAAACGA-AG--GAAAACTACGAGCTGCTTTTTGTCAACGATGG---C    138
                      |    ||| ||  ||...|||.||.|||.|||||||.||||||||   .
BL01936___ykc     96 CT----CGACAGGCGATCCCTATGAACTGATTTTTGTAAACGATGGTTCA    141

BSNT_02178___    139 AGCAAAGACCGCAGTATTGAGATTTTAAGAGAGCACAGCCTGA--TCGAT    186
                     |||.|.|||.|||.|                  ||||..||||  |||.|
BL01936___ykc    142 AGCGATGACAGCATT------------------CACACGCTGAAGTCGCT    173

BSNT_02178___    187 ------------CCGAG--AGTGAAAAT-TATTGATTTTTCAAGGAATTT    221
                                 || ||  ||| ||||| .||..||||.|||||.||.||
BL01936___ykc    174 TGCTCAGTCAGACC-AGGCAGT-AAAATGCATCAATTTCTCAAGAAACTT    221

BSNT_02178___    222 TGGACACCAGATCGCCATTACGGCGGGTATGGATTATGC-ACAGGGGAAT    270
                     .||.||.||||||||.||||||||.||.|..||.||||| .|.||.| |.
BL01936___ykc    222 CGGTCATCAGATCGCGATTACGGCCGGCACAGACTATGCTGCCGGCG-AG    270

BSNT_02178___    271 GCAATCGTCGTCATTGACGCCGATTTGCAGGACCCTCCTGAACTGATTTT    320
                     ||.|||||.||.||.|||||||||||||||||.|||||||||.|||||||
BL01936___ykc    271 GCGATCGTTGTGATCGACGCCGATTTGCAGGATCCTCCTGAATTGATTTT    320

BSNT_02178___    321 AGATATGATTGAAAAGTGGAAGGAAGGCTATGAGGTCGTGTACGCCGTGC    370
                     .||.|||...|||||.|||....||||||.|||.||.||.||||||||.|
BL01936___ykc    321 GGAAATGGCGGAAAAATGGCGCCAAGGCTTTGACGTTGTATACGCCGTCC    370

BSNT_02178___    371 GGACTAAACGAAAAGGGGAAACCTTTTTCAAAAAACAAACCGCGGCTATG    420
                     |.||.||.|||.||||.|||||.|||||||||||.|||||.||.||.|||
BL01936___ykc    371 GCACAAAGCGAGAAGGAGAAACATTTTTCAAAAAGCAAACGGCCGCCATG    420

BSNT_02178___    421 TTTTACCGGCTTCTCAGCGGTA----TGACAGATATTGATATCCCGATTG    466
                     ||.||||||.||.|.||    |    |.|||||..|||||||||||.|.|
BL01936___ykc    421 TTCTACCGGATTTTAAG----AAAACTTACAGACGTTGATATCCCGGTGG    466

BSNT_02178___    467 ATACGGGGGATTTTCGCCTCATGGACAGAAAAGTCTGT-GATGAAATGAA    515
                     ||||.||.||.||.||.|||||||||.|.||.|| .|| .||||||||||
BL01936___ykc    467 ATACAGGAGACTTCCGGCTCATGGACCGGAAGGT-GGTCAATGAAATGAA    515

BSNT_02178___    516 GAGATTAAAAGAAAAAAATCCATTTGTCAGAGGGCTAGTCAGCTGGGTGG    565
                     .|...|.|||||||||||.||.||.|||.|.||.||.|||||||||.|.|
BL01936___ykc    516 CAAGCTGAAAGAAAAAAACCCGTTCGTCCGCGGTCTTGTCAGCTGGCTCG    565

BSNT_02178___    566 GCTTTAAACAGACAGCGGTCGAGTATGTACGTG----ATGAAAGGCTTGC    611
                     |.||.||.||||||||.|||   ||| ||||.|    |.|||.|||||||
BL01936___ykc    566 GGTTCAAGCAGACAGCCGTC---TAT-TACGAGCGCCACGAACGGCTTGC    611

BSNT_02178___    612 CGGAGAAACAAAGTACCCGCTCAAGAAAATGCTGAAGCTGTCAATGGACG    661
                     .||.|||||.|||||||||||.||.||||||||||||||.||..|.||||
BL01936___ykc    612 AGGGGAAACGAAGTACCCGCTGAAAAAAATGCTGAAGCTCTCGCTCGACG    661

BSNT_02178___    662 GCATCACGACATTTTCACATAAACCGCTGAAGCTGGCAAGCTATGCGGGG    711
                     |||||||..|||||||...|.|.||||||||.|||||||||||..|.||.
BL01936___ykc    662 GCATCACTTCATTTTCCTTTCAGCCGCTGAAACTGGCAAGCTACTCAGGA    711

BSNT_02178___    712 ATTTTAATGTCAGGTGCTGGAT----TTCTGTATATG--TTTATCGT--G    753
                     ||..|..||||||     .|||    || |.||||.|  ||.|||||  .
BL01936___ykc    712 ATCGTGCTGTCAG-----CGATCGGCTT-TATATACGCCTTCATCGTCGT    755

BSNT_02178___    754 CTGTATCTGAAGCTATTCACAGAC-AGCACGATTACCGGCTGGTCATCAC    802
                     |||.|  |||||||.||.|| ||| |||||.|||||.||.|||||.||  
BL01936___ykc    756 CTGCA--TGAAGCTGTTTAC-GACAAGCACCATTACAGGATGGTCGTC--    800

BSNT_02178___    803 TTATTG-TGATC------CA--GCTCCTGTTCAGCGGCATTGTCCTTCTG    843
                          | |||||      ||  |||  ||||||||||..||.||||..|.
BL01936___ykc    801 -----GATGATCATTCTGCAATGCT--TGTTCAGCGGATTTATCCTGATC    843

BSNT_02178___    844 ATTTTGGGCGTGATCGGCGAATATATCGGCAGAATCTACGATGAAGCCAA    893
                     ||..|.||.|..|||||||||||.||||||.|.||.||.||.||||..||
BL01936___ykc    844 ATCCTCGGGGCAATCGGCGAATACATCGGCCGCATTTATGACGAAGTGAA    893

BSNT_02178___    894 AGACAGGCCGCTTTA---CATCGTCCAAAAATCGTATGGAATTGAAAGTA    940
                     |||||||||||||||   |||.|.|..||||   ||.||..|||||  .|
BL01936___ykc    894 AGACAGGCCGCTTTATATCATTGACGGAAAA---TACGGGTTTGAA--GA    938

BSNT_02178___    941 AAAG------------ACTCTATAGAGACCAGCATATGTCATAA------    972
                     |.||            .|||       .|||||    |.||||.      
BL01936___ykc    939 ACAGCGGCGGGCGCGAGCTC-------CCCAGC----GCCATATTATGTA    977

BSNT_02178___    972 -    972
                      
BL01936___ykc    978 G    978


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