Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02177 and BL01935

See DNA alignment / Visit BSNT_02177 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:40
# Commandline: needle
#    -asequence pep-align/BSNT_02177___ykcB.1.5803.seq
#    -bsequence pep-align/BL01935___ykcB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02177___ykcB-BL01935___ykcB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02177___ykcB-BL01935___ykcB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02177___ykcB
# 2: BL01935___ykcB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 795
# Identity:     414/795 (52.1%)
# Similarity:   517/795 (65.0%)
# Gaps:         130/795 (16.4%)
# Score: 2039.5
# 
#
#=======================================

BSNT_02177___      1 MEKKKRELDIFLILILLASAFLNIYNIWNDDTVNPYYTAAVTSMMQSFHN     50
                      ..|||::||||:.||:.||.||:|.|||.||.|.||||||.||.|||||
BL01935___ykc      1 -MIKKRKIDIFLVFILVLSAALNLYGIWNSDTDNAYYTAAVESMTQSFHN     49

BSNT_02177___     51 FFYASFDAAGFITVDKPPITFQIQTISALIFGMHGWSVILPQALAGVGSV    100
                     |||||||.|||:||||||:...|||:.||:||:|||||:||:|:|.|.||
BL01935___ykc     50 FFYASFDPAGFVTVDKPPVALWIQTLFALVFGVHGWSVVLPEAIAEVISV     99

BSNT_02177___    101 LLMYLLIKPTFGKTAARIASFIMACTPIAVAVARTNNVDALLVFFLLLAT    150
                     .|:|.::|||||||||||::.|||||||||||:.|||||::||..|::||
BL01935___ykc    100 ALLYFIVKPTFGKTAARISALIMACTPIAVAVSHTNNVDSILVLCLMIAT    149

BSNT_02177___    151 WLLFKAIRKGKLIWLLAAFFVVGVGFNTKMLQAYMILPAFLLFYLIAANA    200
                     ||||||:||||:.|||.||.::|||||.|||||||:||||||||:|.|..
BL01935___ykc    150 WLLFKAVRKGKIGWLLGAFCMIGVGFNVKMLQAYMVLPAFLLFYMIGAKT    199

BSNT_02177___    201 TIKKKIVSLVSALAVLAAVSLSWPLIVDNIPASKRPYIGSSQTNSVLELA    250
                     ||:||:|||::|:.|||.||:||.::||:.|...||||||||||||||||
BL01935___ykc    200 TIRKKVVSLITAVIVLAGVSVSWAVVVDSQPEISRPYIGSSQTNSVLELA    249

BSNT_02177___    251 FGYNGIQRLTGQNSGGGQGAPNKDASKEMSSSDNTQAPPNQSSSNSSSSD    300
                     |||||||||||||..||.|.         ||||:.|....||....::||
BL01935___ykc    250 FGYNGIQRLTGQNGAGGGGT---------SSSDHDQKNQQQSGDIENNSD    290

BSNT_02177___    301 GKSSNGNMAAPPSNGQMPSGGQGGPPSGGDGGQGGPGGDGGKGGTGTGSK    350
                       |:||.| ||||.|:|||||..|.......|.|||||       |||  
BL01935___ykc    291 --SANGQM-APPSGGEMPSGGPDGRQGDVQSGGGGPGG-------GTG--    328

BSNT_02177___    351 MQSGSGMFGTGTPGPLRLFQQELSDQISWLLPFAIFGIAGLLIAGARERR    400
                          |||||||||||||||.|||.|.|||:||.:|||.||||||.|.:|
BL01935___ykc    329 -----GMFGTGTPGPLRLFQSELSGQASWLIPFVLFGIIGLLIAGLRRQR    373

BSNT_02177___    401 RLSIEQKETVFWVAWLVPIAGFFSVAEFFHHYYLIMLAPPIAALVGAGWV    450
                     :.:....||:||:.||:|:|.|||:|.|||||||||||.|||||.||||.
BL01935___ykc    374 KFNETTTETIFWMMWLLPVAAFFSIAGFFHHYYLIMLAAPIAALSGAGWT    423

BSNT_02177___    451 ALVHLYRNQTGWKAWLLPGAIIATTGFELFILRNYNDQIGAGWSIGVGVI    500
                     |||.||:.::|||..|||..|:.||.|||:||..|..:||..|||.:|..
BL01935___ykc    424 ALVRLYQEESGWKKRLLPIGILLTTAFELYILSPYLSEIGFIWSILIGAF    473

BSNT_02177___    501 GVLSAIALLLFKQRQKPFSYYVSLAALLALLVMPIYWASTPLLYGGNSSL    550
                     |:::: .||:|.::.|.|||||||||||.:|:.|.||.:..|..|.|..:
BL01935___ykc    474 GIVTS-CLLIFLKKGKSFSYYVSLAALLGMLIGPFYWTTATLADGVNGMI    522

BSNT_02177___    551 PETGPQLASM----------------------------------------    560
                     |:.||:.|..                                        
BL01935___ykc    523 PQAGPKSAQSFAGGGGGGKMQNNDGSGPPGFGSQDGQTDSNQNNNNGPGF    572

BSNT_02177___    561 --------------------------------------SGKGMGMSDATV    572
                                                           ||.|...|..:|
BL01935___ykc    573 GPGSNSQNSNDSSADTGSGQNSQNQNDEGASGRQQGRPSGGGSPGSGESV    622

BSNT_02177___    573 NEKLIKYLEENNSGAEYLFATTDSNTAAPYIIKTKKAVMAIGGYSGSDPA    622
                     :|:|:.|||:||:|.:||||.:.:.:|..|||||.|||||:||:|||||.
BL01935___ykc    623 DEELLSYLEKNNTGEKYLFAVSSATSAQSYIIKTGKAVMAMGGFSGSDPI    672

BSNT_02177___    623 ITLTQFKKLVKEGKVKYFLASGMGRG-GNNDIVEWVEKNGKEVASEKWQS    671
                     :|:.:.:||||.|:||||:. |.||| .|::|..|:::||.|::..::.|
BL01935___ykc    673 LTVEKLEKLVKNGEVKYFMI-GDGRGRDNSEITNWIKENGTEISKSEYSS    721

BSNT_02177___    672 SSDQKTENTDSADTSSSKASGENGKMGGPGGMNQSATLYELHADE    716
                     |         |:|.|.|         ||||| ||  |||::..| 
BL01935___ykc    722 S---------SSDDSQS---------GGPGG-NQ--TLYKVELD-    744


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_02177 and BL01935

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
