Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02177 and BL01935
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_02177___ykcB.1.5803.seq
# -bsequence dna-align/BL01935___ykcB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02177___ykcB-BL01935___ykcB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02177___ykcB-BL01935___ykcB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02177___ykcB
# 2: BL01935___ykcB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2545
# Identity: 1403/2545 (55.1%)
# Similarity: 1403/2545 (55.1%)
# Gaps: 704/2545 (27.7%)
# Score: 3792.0
#
#
#=======================================
BSNT_02177___ 1 GTG-----GAAAAGAAAAAACGCGAGCTGGATATTTTCCTCATCCTCATT 45
.|| ||||||.|||| |.|||||.|||||..||.|||||
BL01935___ykc 1 ATGATTAAGAAAAGGAAAA--------TCGATATATTCCTGGTCTTCATT 42
BSNT_02177___ 46 -TTGCTCGCATCTGCATTCTTAAATATCTATAACATCTGGAATGATGATA 94
||| |...|||||||...|||||..|.||...||||||||||..|||.|
BL01935___ykc 43 CTTG-TATTATCTGCAGCATTAAACTTGTACGGCATCTGGAATAGTGACA 91
BSNT_02177___ 95 CGGTGAATCCTTATTACACCGCTGCAGTCACAAGTATGATGCAAAGCTTT 144
|.|..||..|.||.||.||.||.||.||...||||||||..|||||||||
BL01935___ykc 92 CAGACAACGCCTACTATACGGCGGCCGTTGAAAGTATGACCCAAAGCTTT 141
BSNT_02177___ 145 CATAATTTTTTCTATGCCTCATTCGACGCGGCGGGGTTTATAACGGTTGA 194
|||||.||.||.||.||.|||||.||..||||.||.|||.||||.|||||
BL01935___ykc 142 CATAACTTCTTTTACGCATCATTTGATCCGGCAGGCTTTGTAACAGTTGA 191
BSNT_02177___ 195 TAAACCGCCTATTAC------GTTTCAGATACAAACCATCAGCGCACTTA 238
||||||||||.|..| |.||||||.|| |....||||||.
BL01935___ykc 192 TAAACCGCCTGTCGCACTCTGGATTCAGACAC------TTTTTGCACTTG 235
BSNT_02177___ 239 TATTCGGTATGCACGGCTGGAGCGTCATCCTGCCTCAGGCACTTGCTGGT 288
|||||||..|||||||||||||||||.|.||.|||.|.||..||||.|..
BL01935___ykc 236 TATTCGGCGTGCACGGCTGGAGCGTCGTTCTCCCTGAAGCCATTGCGGAA 285
BSNT_02177___ 289 GTAGGTTCTGT-----CCTTTTAATGTATCTGTTAATAAAACCGACATTC 333
||...|||.|| .|||.||.|.||| || |||||||.||.||.
BL01935___ykc 286 GTGATTTCCGTAGCACTCTTGTACTTTAT-TG----TAAAACCTACTTTT 330
BSNT_02177___ 334 GGTAAGACAGCAGCAAGAATTGC--CTCTTTCATCATGGCATGTACACCG 381
||.||.||.||.||.||||||.| ||||| ||.|||||.|||||.|||
BL01935___ykc 331 GGCAAAACGGCGGCCAGAATTTCAGCTCTT--ATTATGGCGTGTACGCCG 378
BSNT_02177___ 382 ATTGCTGTAGCTGT-AGCACGTACAAACAATGTTGA-TGCATTACTGGTA 429
|||||.||.||.|| ||| |.|||||||||.||.|| .||||| ||.||.
BL01935___ykc 379 ATTGCCGTTGCGGTCAGC-CATACAAACAACGTCGACAGCATT-CTCGTC 426
BSNT_02177___ 430 TTTTTCTTATTGCTTGCTACATGGCTTCTCTTTAAAGCGATCAGAAAAGG 479
.|||.|||..||.||||.||.|||||..|.||||||||..||.|.|||||
BL01935___ykc 427 CTTTGCTTGATGATTGCAACGTGGCTGTTGTTTAAAGCAGTCCGGAAAGG 476
BSNT_02177___ 480 AAAGCTGATCTGGCTGTTAGCAGCATTTTTCGT-TG-TTGGAGTAGGATT 527
|||..|...|||||||.|.|..|||||.| || || |.||.||.||.||
BL01935___ykc 477 AAAAATCGGCTGGCTGCTCGGCGCATTCT--GTATGATCGGTGTCGGTTT 524
BSNT_02177___ 528 TAATACAAAAATGCTGCAGGCTTACATGATTTTACCGGCTTTCTTATTGT 577
|||....|||||||||||.|||||||||.|.||||||||.|||.|..|||
BL01935___ykc 525 TAACGTCAAAATGCTGCAAGCTTACATGGTATTACCGGCATTCCTGCTGT 574
BSNT_02177___ 578 TCTATCTGATTGCGGC--AAACGCCACAATCAAGAAAAAAATCGTTTCAT 625
|.||..||||||..|| ||||| ||.||....||||||.|.||.||..
BL01935___ykc 575 TTTACATGATTGGAGCCAAAACG--ACGATTCGCAAAAAAGTTGTGTCTC 622
BSNT_02177___ 626 TGGTAAGTGCGTTAGCCGT-AT-----TAGCAGCCGTTT-CGTTATCGTG 668
|..|.| .|||||| || |.||||..|||| |||| ||.||
BL01935___ykc 623 TTATCA------CAGCCGTGATCGTTCTGGCAGGTGTTTCCGTT-TCCTG 665
BSNT_02177___ 669 GCCGCTCATTGTCGACAATATCCCTGCAAGC--------AAGCGGCCTTA 710
|.||.|..|.||||||| ||.||| ..|||.|||||
BL01935___ykc 666 GGCGGTTGTCGTCGACA--------GCCAGCCCGAGATTTCGCGCCCTTA 707
BSNT_02177___ 711 TATCGGAAGCAGCCAAACCAACTCTGTTTTGGAATTGGCTTTCGGCTATA 760
|||||||||||||||.|||||||||||..|.||..||||.||.|||||||
BL01935___ykc 708 TATCGGAAGCAGCCAGACCAACTCTGTCCTTGAGCTGGCGTTTGGCTATA 757
BSNT_02177___ 761 ACGGAATCCAGCGGCTGACAGGCCAAAA---TTCAGGCGGCGGCCAGGGT 807
||||.||||||||.||.|||||.||||| |.|||||||.|||
BL01935___ykc 758 ACGGCATCCAGCGTCTCACAGGTCAAAACGGTGCAGGCGGGGGC------ 801
BSNT_02177___ 808 GCGCCAAACAAAGACGCTTCAAAAGAAATGTCTTCTTCTGATAACACTC- 856
|.||..||.||.||||||.|...||
BL01935___ykc 802 ------------------------GGAACCTCCTCATCTGATCATGATCA 827
BSNT_02177___ 857 -AAGCACCGCCTAATCAGTCATCAAGCAACAGCTCATCAAGCGATGGT-A 904
||| |||||| .||||| ||| .|||||..| |
BL01935___ykc 828 AAAG--------AATCAG-----CAGCAA-AGC------GGCGATATTGA 857
BSNT_02177___ 905 AATC--CTCAAA--TGGCAATATGGCGGCGCCTCCATCCAATGGCCAAAT 950
||.| ||||.| .|||| |||||.|||||
BL01935___ykc 858 AAACAACTCAGACTCGGCA--------------------AATGGACAAAT 887
BSNT_02177___ 951 ------GCCAAGCGGCGGTCAAGGAGGCCCTCCAAGCGGCGGA---GATG 991
|||.|||||.||..|| |.|||.|| .|||||| ||||
BL01935___ykc 888 GGCTCCGCCGAGCGGAGGCGAA--ATGCCTTC----GGGCGGACCGGATG 931
BSNT_02177___ 992 GC------------GGCCAAGGCGGACCCGGCGGAG---ACGGAGGGAAA 1026
|| |.||||.|||| |||||||| .||| .
BL01935___ykc 932 GCCGGCAGGGTGATGTCCAAAGCGG---CGGCGGAGGTCCCGG------T 972
BSNT_02177___ 1027 GGCGGTACAGGAACCGGTTCGAAAATGCAATCAGGTTCAGGGATGTTTGG 1076
|||||.||||| .||.||||||||
BL01935___ykc 973 GGCGGCACAGG---------------------------CGGCATGTTTGG 995
BSNT_02177___ 1077 AACGGGAACACCTGGTCCACTGCGGCTTTTCCAACAAGAGTTATCTGATC 1126
.||.|||||.||.|||||.||..|.||.||||||...|||.|.||.|..|
BL01935___ykc 996 CACTGGAACCCCGGGTCCTCTCAGACTATTCCAATCTGAGCTTTCAGGAC 1045
BSNT_02177___ 1127 AAATCAGCTGGCTTCTGCCATTTGCGATTTTTGGAATCGCAGGCTTACTG 1176
|....||||||||..|.||.||||...|.||.||.|||...||.||.|||
BL01935___ykc 1046 AGGCTAGCTGGCTGATCCCGTTTGTCCTCTTCGGCATCATCGGTTTGCTG 1095
BSNT_02177___ 1177 ATCGCTGG----CGCGAGAGAAAGAAGAAGATTATCTATAGAGCA--GAA 1220
|||||.|| ||| |||.||||||.| .||.||..|.|| ||.
BL01935___ykc 1096 ATCGCGGGTCTTCGC-AGACAAAGAAAA-----TTCAATGAAACAACGAC 1139
BSNT_02177___ 1221 GGAAACGGTGTTCTGGGTTGCGTGGCTTGTACCGATTGCCGGATTCTTCA 1270
.|||||..|.||||||.|...|||||||.|.|||.|.||.|.||||||||
BL01935___ykc 1140 TGAAACAATTTTCTGGATGATGTGGCTTCTGCCGGTCGCTGCATTCTTCA 1189
BSNT_02177___ 1271 GTGTCGCAGAATTTTTCCATCATTATTATCTCATCATGCTGGCACCGCCG 1320
|..||||||.|||.|||||||||||.|||||.||.|||||||||.|.||.
BL01935___ykc 1190 GCATCGCAGGATTCTTCCATCATTACTATCTGATTATGCTGGCAGCTCCA 1239
BSNT_02177___ 1321 ATTGCGGCTCTTGTC-GGTGCGGGATGGGTTGCTCTTGTTCATCTGTACC 1369
||.||.||| ||||| |||||.||.|||...||.||.|||| .||
BL01935___ykc 1240 ATCGCCGCT-TTGTCAGGTGCAGGCTGGACGGCGCTCGTTC------GCC 1282
BSNT_02177___ 1370 GCAATCAG------ACAGGCTGGAAAGCATGGCTTTTGCCGGGAGCAAT- 1412
.|.||||| |..|||||||||..|.||||..||| ||||
BL01935___ykc 1283 TCTATCAGGAAGAAAGCGGCTGGAAAAAACGGCTGCTGC------CAATC 1326
BSNT_02177___ 1413 ----TATTGC-GACAACTGGATTTGAATTGTTTATTCTCAG----AAACT 1453
|.|||| ||||||.|.|||||||||||.||||.|.|| .|.||
BL01935___ykc 1327 GGCATTTTGCTGACAACCGCATTTGAATTGTATATTTTGAGTCCTTATCT 1376
BSNT_02177___ 1454 ACAACGATCAAATCGG-TGCAGGCTGGAGCATCGGTG-TAGGTGTTATCG 1501
||.|| ||||||| |.|| .||||||||| ..|| |.||.|.|.|||
BL01935___ykc 1377 -CAGCG---AAATCGGCTTCA-TCTGGAGCAT-ATTGATCGGCGCTTTCG 1420
BSNT_02177___ 1502 GCGTGTTGTC---AGCGATTG-CTTTGCTGCTGTTT----AAACAGCGCC 1543
|| .||||| ||| || ||| ||..|.||| |.|.||
BL01935___ykc 1421 GC--ATTGTCACAAGC---TGTCTT--CTCATCTTTCTCAAGAAAG---- 1459
BSNT_02177___ 1544 AAAAACCGTTCAGTTATTATGTTTCACTTGCAGCTCT-CCTCGCATTGCT 1592
.|||..|.|||||.||.|||||.|||||||||||.|| |.|.||| ||||
BL01935___ykc 1460 GAAAGTCATTCAGCTACTATGTATCACTTGCAGCGCTGCTTGGCA-TGCT 1508
BSNT_02177___ 1593 GGTGATGCCGATTTACTGGGCAA--------------------GTACACC 1622
|.|...|||..|.||.|||.||| |||.||.
BL01935___ykc 1509 GATCGGGCCTTTCTATTGGACAACGGCGACGCTTGCTGACGGTGTAAACG 1558
BSNT_02177___ 1623 GC-----------------------TTCTGTAC----------------- 1632
|| .||.|.||
BL01935___ykc 1559 GCATGATTCCACAGGCCGGACCTAAATCCGCACAATCATTTGCCGGCGGT 1608
BSNT_02177___ 1633 ------GGAGGCAA------------------CAG-----CTC------- 1646
|||||.|| ||| |||
BL01935___ykc 1609 GGCGGAGGAGGTAAGATGCAGAATAACGACGGCAGCGGACCTCCCGGATT 1658
BSNT_02177___ 1647 -----------ACTGCCTGAAACA------------------------GG 1661
||.||| ||||| ||
BL01935___ykc 1659 TGGCAGCCAAGACGGCC--AAACAGACAGTAATCAAAACAACAATAATGG 1706
BSNT_02177___ 1662 CCC-------------------------------------------TCAG 1668
||| ||||
BL01935___ykc 1707 CCCTGGCTTCGGTCCAGGTTCAAACAGCCAAAACAGCAACGATTCTTCAG 1756
BSNT_02177___ 1669 CT-----CGCATC----------------------AATG----------- 1680
|| ||..|| ||||
BL01935___ykc 1757 CTGATACCGGTTCCGGCCAAAACAGCCAAAATCAGAATGACGAAGGCGCA 1806
BSNT_02177___ 1681 AGCGG------AAAAGGCA----------------------TGGGAATGT 1702
||||| |.|||||| |||.|
BL01935___ykc 1807 AGCGGCCGTCAACAAGGCAGACCAAGCGGCGGCGGCAGCCCTGGAA---- 1852
BSNT_02177___ 1703 CTGATGCGA--CTGTAAATGAAAAACTGATCAAATATCTAGAGGAGAATA 1750
|..|||| |.||..|||||.|||||.|.|..||.||.||..||||.|
BL01935___ykc 1853 --GCGGCGAGTCGGTCGATGAAGAACTGTTGAGCTACCTTGAAAAGAACA 1900
BSNT_02177___ 1751 ACTCCGGAGCTGAATACCTATTCGC-----CA----CAACCGATTC-GAA 1790
||.||||.|...||||..||||.|| || |||| ||| |..
BL01935___ykc 1901 ACACCGGTGAAAAATATTTATTTGCAGTCTCAAGTGCAAC---TTCTGCT 1947
BSNT_02177___ 1791 CACAGCGGCACCATATATCATTAAAACGAAAAAAGCTGTCATGGCTATTG 1840
|| |.|.||.|||||.||||||...||||||||.|||||.||.|
BL01935___ykc 1948 CA-------ATCTTACATCATCAAAACGGGCAAAGCTGTGATGGCGATGG 1990
BSNT_02177___ 1841 GCGGATAC------AGCGGTTCTGACCCGGCGATCACACTGACTCAATTC 1884
||||||.| ||| |||||| |...|||| ..|.
BL01935___ykc 1991 GCGGATTCTCAGGAAGC------GACCCG------ATTTTGAC---GGTT 2025
BSNT_02177___ 1885 AAAAAACTT---------GTAAAAGAAGGAAAAGTGAAATACTTC----T 1921
.|||||||| ||.|||.|.||..||||.||.|||||| |
BL01935___ykc 2026 GAAAAACTTGAGAAGCTCGTCAAAAACGGCGAAGTCAAGTACTTCATGAT 2075
BSNT_02177___ 1922 TGGCTTCTGGAATGGGAAGAGGCGGAAACAATGACATTGTTGAATGGGTT 1971
.|||..| ||..|||||.|..|||| ||
BL01935___ykc 2076 CGGCGAC-------GGCCGAGGCCGGGACAA-----------------TT 2101
BSNT_02177___ 1972 GAGAA------AAATGGA--AAAGAAGTAGCATCAGAAAAATGGCAATCA 2013
.|||| ||.|||| |||| ||||.||||...|
BL01935___ykc 2102 CAGAAATCACCAACTGGATTAAAG-------------AAAACGGCACAGA 2138
BSNT_02177___ 2014 AGTTCTGATCAAAAAACAGAAAATACTGATTCGGCTGATACATCAAGCAG 2063
|.|| ||||||| ||..|||| |||||
BL01935___ykc 2139 AATT----TCAAAAA------------------GCGAATAC----AGCAG 2162
BSNT_02177___ 2064 CAAGGCTTCAGGTGA---AAACGGCAAAATGGGCGGACCTGGCGGAATGA 2110
|....||||.|.||| |.| |.|| ||||||||||||||| |
BL01935___ykc 2163 CTCTTCTTCTGATGATTCACA-GTCA-----GGCGGACCTGGCGGA---A 2203
BSNT_02177___ 2111 ATCAGTCAGCAA--CATTATACGAACTACATGCTG--ATGAATAG 2151
|||| || |.||||| ||.|..| |||| .|||
BL01935___ykc 2204 ATCA------AACGCTTTATA--AAGTGGA-GCTGGATTGA---- 2235
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