Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00502 and BL01687

See DNA alignment / Visit BSNT_00502 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:07
# Commandline: needle
#    -asequence pep-align/BSNT_00502___ycdF.1.5803.seq
#    -bsequence pep-align/BL01687___ycdF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00502___ycdF-BL01687___ycdF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00502___ycdF-BL01687___ycdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00502___ycdF
# 2: BL01687___ycdF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 259
# Identity:     187/259 (72.2%)
# Similarity:   222/259 (85.7%)
# Gaps:           3/259 ( 1.2%)
# Score: 960.5
# 
#
#=======================================

BSNT_00502___      1 MYKDLTGKTAIVTGSSKGIGKAIAERFGQEKMNVVVNYHSDPSGADETLE     50
                     ||.||.||||||||||||||||:|||||:|||||||||||||.||.|.::
BL01687___ycd      1 MYSDLKGKTAIVTGSSKGIGKAVAERFGKEKMNVVVNYHSDPGGAREAVD     50

BSNT_00502___     51 IIKQNGGKAVAVEADVSKEEGIQALLDTALEHFGTLDVMVNNSGFNGDEA    100
                     .|:..||.|:|:|||||.||.::.|:::|:||||:||||||||||||..|
BL01687___ycd     51 NIQAAGGNALAIEADVSSEEDVKKLINSAVEHFGSLDVMVNNSGFNGAGA    100

BSNT_00502___    101 MPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQ    150
                     .|||:.|::||:|||||:||.||.|:.||.:|....:||::|||||||||
BL01687___ycd    101 FPHELELDEWQKVIDVNLTGAFLCAREALKYMADRRMKGSILNISSVHQQ    150

BSNT_00502___    151 IPRPVNVQYSTSKGGIKMMTETLALNYADKEIRVNAIAPGTIATESNVDT    200
                     ||||.||.||.||||:|::||||||:||||.||||||||||||||||.|.
BL01687___ycd    151 IPRPKNVHYSASKGGMKLLTETLALDYADKGIRVNAIAPGTIATESNEDL    200

BSNT_00502___    201 KKEESRQ-KQLKKIPMQAFGKPEEVAAAAAWLVSEEASYVTGTTLFVDGG    249
                       |.||: :|||||||..||:||:||:|||||||:||:||||.|||||||
BL01687___ycd    201 --EGSRKSEQLKKIPMNEFGEPEQVASAAAWLVSQEAAYVTGATLFVDGG    248

BSNT_00502___    250 MTLYPSQLE    258
                     |||||||||
BL01687___ycd    249 MTLYPSQLE    257


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