Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00502 and BL01687

See Amino acid alignment / Visit BSNT_00502 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:08
# Commandline: needle
#    -asequence dna-align/BSNT_00502___ycdF.1.5803.seq
#    -bsequence dna-align/BL01687___ycdF.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00502___ycdF-BL01687___ycdF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00502___ycdF-BL01687___ycdF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00502___ycdF
# 2: BL01687___ycdF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 826
# Identity:     550/826 (66.6%)
# Similarity:   550/826 (66.6%)
# Gaps:         101/826 (12.2%)
# Score: 1771.5
# 
#
#=======================================

BSNT_00502___      1 ATGTACAAAGATTTAACCGGAAAAACAGCGATTGTGACAGGGTCTTCAAA     50
                     .||||.|..|||||||..|||||||||||.||||||||.||.||||||||
BL01687___ycd      1 TTGTATAGTGATTTAAAAGGAAAAACAGCAATTGTGACCGGCTCTTCAAA     50

BSNT_00502___     51 AGGAATCGGGAAAGCCATTGCGGAACGGTTCGGACAGGAGAAAATGAATG    100
                     |||.||.||.||.||..||||.||||||||.|||.|.||.||.|||||||
BL01687___ycd     51 AGGTATAGGCAAGGCGGTTGCAGAACGGTTTGGAAAAGAAAAGATGAATG    100

BSNT_00502___    101 TTGTTGTAAATTACCACAGCGA-CCCGTCTGGAGCAGATGAAACTCTGGA    149
                     |.|||||.|||||.|||||||| |||| ..||.|||...|||.|..|.||
BL01687___ycd    101 TGGTTGTCAATTATCACAGCGATCCCG-GAGGCGCACGGGAAGCCGTCGA    149

BSNT_00502___    150 -AATCATT-AAGCAGAACGGAGGGAAA-GCCGTCGCAGTTGAGGCGGACG    196
                      ||| ||| ||||||  |||..||||| |||.|.||..|.||.||.||||
BL01687___ycd    150 CAAT-ATTCAAGCAG--CGGGCGGAAACGCCCTTGCGATAGAAGCTGACG    196

BSNT_00502___    197 TGTCAAAAGAAGAGG------------GGATTCAGGCGCTCTTGGACACA    234
                     ||||....|||||||            .||||.|       ||     ||
BL01687___ycd    197 TGTCTTCCGAAGAGGACGTGAAAAAGCTGATTAA-------TT-----CA    234

BSNT_00502___    235 GCTTTAGAGCATTTCGGCACGCTCGATGTGATGGTAAACAACTCCGGTTT    284
                     ||..|.||.||.||.||..|.||.|||||.|||||.||.||.||.||.||
BL01687___ycd    235 GCAGTTGAACACTTTGGTTCACTTGATGTTATGGTCAATAATTCAGGATT    284

BSNT_00502___    285 TAACGGTGATGAGGCGATGCCGCATGAGA--TGAGTCTTGAAGATTGGCA    332
                     ||||||.|..|..||..|.|||||.|| |  |||| |||||.||.|||||
BL01687___ycd    285 TAACGGCGCGGGCGCCTTTCCGCACGA-ACTTGAG-CTTGATGAGTGGCA    332

BSNT_00502___    333 GAGAGTAATTGATGTCAATGTTACCGGAACCTTTCTGGGAGCGAAAGC--    380
                     ||.|||.||.||.||.|||.|.|||||..|.|||||  ..|||.|.||  
BL01687___ycd    333 GAAAGTGATCGACGTTAATTTAACCGGTGCGTTTCT--CTGCGCACGCGA    380

BSNT_00502___    381 AGCACTTAA----------------CCACATGATGAAAAACAATATCAAG    414
                     ||| |||||                ||.|||||              |||
BL01687___ycd    381 AGC-CTTAAAATATATGGCGGACCGCCGCATGA--------------AAG    415

BSNT_00502___    415 G--GCAATGTGCTGAATATCTCAAGTGTTCATCAGCAGATTCCGCGCCCT    462
                     |  |||   |.||.|||||.||.||.|||||||||||.||||||.|.||.
BL01687___ycd    416 GAAGCA---TACTCAATATATCCAGCGTTCATCAGCAAATTCCGAGACCG    462

BSNT_00502___    463 GTCAACGTTCAGTATTCCACATCCAAAGGCGGCATCAAGATGATGACGGA    512
                     ...||.|||||.||.|||.|.||.||||||||.||.|||.||.|.||.||
BL01687___ycd    463 AAAAATGTTCACTACTCCGCTTCAAAAGGCGGAATGAAGCTGTTAACAGA    512

BSNT_00502___    513 AACGCTGGCGCTCAATTATGCGGATAAGGAAATCCGCGTCAATGCGATAG    562
                     ||||||.||.||..|.||||||||.||.|.||||||||||||||||||.|
BL01687___ycd    513 AACGCTTGCCCTAGACTATGCGGACAAAGGAATCCGCGTCAATGCGATTG    562

BSNT_00502___    563 CGCCCGGCACCATTGCCACAGAATCAAATG-----TTGATACGAAAAAGG    607
                     ||||.||.||.|||||.||.|||...||||     |||            
BL01687___ycd    563 CGCCGGGAACGATTGCGACCGAAAGCAATGAAGACTTG------------    600

BSNT_00502___    608 AAGAGAGCAG--GCAA----AAACAATTGAAAAAAATCCCGATGCAAGCC    651
                       |||.|.||  ||||    .||||..|||||||.||.||.|||.|.|..
BL01687___ycd    601 --GAGGGAAGCCGCAAGTCGGAACAGCTGAAAAAGATACCCATGAACGAA    648

BSNT_00502___    652 TTCGGAAAGCCTGAAGAAGTGGCGGCAGCAGCGGCTTGGCTCGTATCTGA    701
                     ||.||..||||||||.|||||||..|.||||||||.|||||.||.||..|
BL01687___ycd    649 TTTGGCGAGCCTGAACAAGTGGCTTCCGCAGCGGCATGGCTTGTGTCGCA    698

BSNT_00502___    702 GGAAGCAAGCTATGTGACCGGCACAACACTTTTCGTCGATGGCGGGATGA    751
                     .|||||...||||||.||.|||.|.||..|.|||||.||.|||||.||||
BL01687___ycd    699 AGAAGCCGCCTATGTAACGGGCGCGACTTTATTCGTTGACGGCGGCATGA    748

BSNT_00502___    752 CACTTTATCCGTCTCAGCTTGAATAG    777
                     |.||.|||||.||.|||||.||||||
BL01687___ycd    749 CGCTGTATCCATCACAGCTGGAATAG    774


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00502 and BL01687

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
