Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03678 and BL01566

See DNA alignment / Visit BSNT_03678 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence pep-align/BSNT_03678___comGG.1.5803.seq
#    -bsequence pep-align/BL01566___comGG.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03678___comGG-BL01566___comGG.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03678___comGG-BL01566___comGG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03678___comGG
# 2: BL01566___comGG
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 125
# Identity:      43/125 (34.4%)
# Similarity:    78/125 (62.4%)
# Gaps:           5/125 ( 4.0%)
# Score: 215.0
# 
#
#=======================================

BSNT_03678___      1 MYRTRGFIYPAVLFVSALVLLIVNFAAAQYISRCMFEKETKELYIGENLL     50
                     |..::||||||.:|.:.:.:|..:.:||...::..|.::|||.:|.:|||
BL01566___com      1 MKNSKGFIYPAAVFAAVICMLCASHSAALLTNQRTFAQQTKEFHIQQNLL     50

BSNT_03678___     51 QNGVLLSIRHVLEERKGQEGTQQFPYGRVSYYIHDTSIKEQKEINLRVST    100
                     |||:|.::.|:.||.|.:...|   :|.:||.: ..:.::...:.::|:|
BL01566___com     51 QNGILHALSHIHEETKEKVQKQ---HGLISYSV-SPAHQQLTRVQIQVTT     96

BSNT_03678___    101 ESGTERTAQIVFDQKQKKLLRWTE-    124
                     .||||.:||..:|.:.:|:.:|.| 
BL01566___com     97 ASGTETSAQFQYDLRNQKITQWKEY    121


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.