Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_04408 and BL01358

See DNA alignment / Visit BSNT_04408 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:35
# Commandline: needle
#    -asequence pep-align/BSNT_04408___amyD.1.5803.seq
#    -bsequence pep-align/BL01358___amyD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04408___amyD-BL01358___amyD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04408___amyD-BL01358___amyD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04408___amyD
# 2: BL01358___amyD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 308
# Identity:     218/308 (70.8%)
# Similarity:   248/308 (80.5%)
# Gaps:          22/308 ( 7.1%)
# Score: 1133.5
# 
#
#=======================================

BSNT_04408___      1 MSEIARDVHVKQVKPK-----KQSSLWWMYIPALLSVLVFMIYPFVKGTL     45
                     |||:|::..:..||.|     |..||||||:|||..|.|||||||..|..
BL01358___amy      1 MSELAKEKSLTIVKSKRRYVRKNGSLWWMYLPALALVSVFMIYPFASGIK     50

BSNT_04408___     46 ITFTNWNGFSQVYQWVGFAQYERLFSDPDTWHILKNTLLYGLGSTFFQNV     95
                     |||||||||||.|.|:|||||:|:.:||.||.::|||||||||||.||||
BL01358___amy     51 ITFTNWNGFSQSYDWIGFAQYKRMLADPATWLVVKNTLLYGLGSTVFQNV    100

BSNT_04408___     96 VGLLYALLLNQSIKTKAVTRTIVYLPVMISPLIMGYIWYFFFSYDGGALN    145
                     :||||||||.:|||.||:|||:|||||:||||||||||||||||:|||||
BL01358___amy    101 IGLLYALLLFKSIKMKALTRTVVYLPVIISPLIMGYIWYFFFSYEGGALN    150

BSNT_04408___    146 DLLGVFGISPINALASP----------------SIAMVVYLAGLQSIPKD    179
                     |||.:||..|:|||:||                .||||:|||||.|:|||
BL01358___amy    151 DLLKLFGAGPVNALSSPEINPWIIVFVNSYQFVGIAMVIYLAGLGSVPKD    200

BSNT_04408___    180 YYEAAQMDGAKQGQQFFTITLPLLMPSITINMVINIIGGLKLFDVIIALT    229
                     :|||||:|||...|||:.|||||||||:||||||||||||||||||:|||
BL01358___amy    201 FYEAAQIDGASGFQQFWKITLPLLMPSVTINMVINIIGGLKLFDVILALT    250

BSNT_04408___    230 AGGPGNASQSMSTFMYDLYFKRQDAGYAATQGIFMAFVILIISFCALAYF    279
                     .||||||||||||||||||||||||||||.||:|||.:||:|||.||.||
BL01358___amy    251 GGGPGNASQSMSTFMYDLYFKRQDAGYAAAQGVFMAVLILLISFTALIYF    300

BSNT_04408___    280 KRKETEMS    287
                     ||||.|. 
BL01358___amy    301 KRKEVEA-    307


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