Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04408 and BL01358

See Amino acid alignment / Visit BSNT_04408 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:35
# Commandline: needle
#    -asequence dna-align/BSNT_04408___amyD.1.5803.seq
#    -bsequence dna-align/BL01358___amyD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04408___amyD-BL01358___amyD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04408___amyD-BL01358___amyD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04408___amyD
# 2: BL01358___amyD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 961
# Identity:     631/961 (65.7%)
# Similarity:   631/961 (65.7%)
# Gaps:         134/961 (13.9%)
# Score: 2060.5
# 
#
#=======================================

BSNT_04408___      1 ATGAGTGAGATCGC---------AAG--GGACGTTCATGTGAAACAG---     36
                     |||||.||..|.||         |||  .|||  |..||||||| ||   
BL01358___amy      1 ATGAGCGAATTAGCTAAAGAAAAAAGTCTGAC--TATTGTGAAA-AGTAA     47

BSNT_04408___     37 ----------GTTAAGCCAAAAAAGCAGTCCTCACTTTGGTGGATGTACA     76
                               ||.|.|  |||||.|.|    ||.||.|||||||||||..
BL01358___amy     48 AAGGAGATATGTGAGG--AAAAATGGA----TCGCTCTGGTGGATGTATC     91

BSNT_04408___     77 TTCCTGCTTTG------CTCTCCGTTCTGGTCTTTATGATTTATCCGTTT    120
                     ||||.||.|||      .|.|||      |||||||||||||||||||||
BL01358___amy     92 TTCCCGCCTTGGCGCTTGTATCC------GTCTTTATGATTTATCCGTTT    135

BSNT_04408___    121 GTGAAAGGCACATT--GATTACCTTTACAAACTGGAACGGCTTTTCACAA    168
                     |.||..||  ||||  .||.||.||.||.|||||||||||.||.|||| |
BL01358___amy    136 GCGAGCGG--CATTAAAATCACGTTCACGAACTGGAACGGTTTCTCAC-A    182

BSNT_04408___    169 GTC-TACCAATGGGTTGGATTCGCGCAATATGAAAGGCTGTTTTCTGATC    217
                     ||| ||..|.|||.|.||.||.||.||||||.||.||.||.|..|.||.|
BL01358___amy    183 GTCGTATGACTGGATCGGCTTTGCCCAATATAAACGGATGCTGGCCGACC    232

BSNT_04408___    218 CTGACACTTGGCATATCTTAAAAAACACGCTGCTTTACGGGCTTGGCAGC    267
                     |.|..||.||||.|.||.|.||||||||.||.||.|||||..|.|||||.
BL01358___amy    233 CGGCGACATGGCTTGTCGTCAAAAACACCCTCCTGTACGGATTGGGCAGT    282

BSNT_04408___    268 ACTTTTTTTCAAAATGTGGTCGGGCTTCTATACGC---TCTGCTCTTAAA    314
                     ||..||||.||.|||||..||||.|||||.||.||   .|||||.||   
BL01358___amy    283 ACGGTTTTCCAGAATGTCATCGGTCTTCTCTATGCCCTCCTGCTGTT---    329

BSNT_04408___    315 TCAAAGCATTAAAACGAAAGCGGTAACAAGAACAATTGTGTATTTGCCGG    364
                     |.|||||||.||||.|||||||.|.||||||||..||||.||||||||.|
BL01358___amy    330 TAAAAGCATCAAAATGAAAGCGCTGACAAGAACGGTTGTCTATTTGCCCG    379

BSNT_04408___    365 TGATGATCAGCCCGCTCATTATGGGCTACATTTGGTACTTTTTCTTCTCC    414
                     |.||.|||||||||||.||.|||||.||.||.||||||||.|||||||||
BL01358___amy    380 TCATCATCAGCCCGCTGATCATGGGGTATATCTGGTACTTCTTCTTCTCC    429

BSNT_04408___    415 TATGACGGAGGCGCGCTCAATGATTTGCT--------------CGGG---    447
                     |||||.||||||||..|.||.||||||||              |.||   
BL01358___amy    430 TATGAAGGAGGCGCCTTGAACGATTTGCTGAAACTATTTGGAGCAGGTCC    479

BSNT_04408___    448 -GTCTTCGGC---ATCAGCCC---TATTAATGCG------CTCG------    478
                      |||..||.|   |.||||||   .||.|||.||      .|||      
BL01358___amy    480 TGTCAACGCCTTGAGCAGCCCGGAAATCAATCCGTGGATCATCGTATTTG    529

BSNT_04408___    479 ----------CCAGTCCCTCG--ATCGCTATGGTTGTCTACTTAGCCGGT    516
                               .||||...|||  ||.||.|||||..|.||.|||||.|||
BL01358___amy    530 TCAATTCCTATCAGTTTGTCGGTATAGCGATGGTCATTTATTTAGCAGGT    579

BSNT_04408___    517 CTGCAAAGCATTCCGAAAGACTACTATGAAGCGGCGCAAATGGATGGCGC    566
                     ||...||||.||||||||||.|..|||||||||||||||||.||.||.||
BL01358___amy    580 CTCGGAAGCGTTCCGAAAGATTTTTATGAAGCGGCGCAAATCGACGGAGC    629

BSNT_04408___    567 GAAACAAGGC------CAGCAGTTTTTTACCATCACGCTGCCGCTGTTAA    610
                           |.||      |||||.||||..|..||.||||||||||||||.|
BL01358___amy    630 ------AAGCGGTTTTCAGCAATTTTGGAAGATTACGCTGCCGCTGTTGA    673

BSNT_04408___    611 TGCCCTCCATTACCATTAATATGGTCATCAACATTATCGGAGGCTTAAAG    660
                     ||||.||..|.||.||.||.|||||.|||||.||.|||||.||..|.|||
BL01358___amy    674 TGCCTTCTGTCACGATCAACATGGTAATCAATATCATCGGCGGACTGAAG    723

BSNT_04408___    661 CTGTTTGACGTCATCATTGCACTCACCGCTGGCGGCCCCGGAAATGCGTC    710
                     ||||||||.|||||..|.||.||.||.|..|||||.||.||||||||.||
BL01358___amy    724 CTGTTTGATGTCATTTTAGCGCTGACAGGCGGCGGTCCGGGAAATGCTTC    773

BSNT_04408___    711 ACAATCCATGTCCACGTTTATGTATGATTTGTATTTCAAACGGCAGGATG    760
                     .|||||.|||||.||.||||||||.|||.|||||||.||..|||||||||
BL01358___amy    774 GCAATCGATGTCGACTTTTATGTACGATCTGTATTTTAAGAGGCAGGATG    823

BSNT_04408___    761 CCGGCTATGCCGCAACGCAAGGCATATTTATGGCATTTGTCATTTTGATC    810
                     ||||||||||.||..|.||.||..|.||.|||||..|..|.||..||.|.
BL01358___amy    824 CCGGCTATGCAGCCGCTCAGGGGGTTTTCATGGCGGTGTTGATACTGCTA    873

BSNT_04408___    811 ATCAGCTTTTGCGCGCTTGCGTACTTTAAAAGAAAGGAGACGGAAATGTC    860
                     |||||||||...||.||....||.|||||..|.||||||        |||
BL01358___amy    874 ATCAGCTTTACGGCTCTCATCTATTTTAAGCGCAAGGAG--------GTC    915

BSNT_04408___    861 ATGA-------    864
                       ||       
BL01358___amy    916 --GAAGCCTAG    924


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