Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04408 and BL01358
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_04408___amyD.1.5803.seq
# -bsequence dna-align/BL01358___amyD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04408___amyD-BL01358___amyD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04408___amyD-BL01358___amyD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04408___amyD
# 2: BL01358___amyD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 961
# Identity: 631/961 (65.7%)
# Similarity: 631/961 (65.7%)
# Gaps: 134/961 (13.9%)
# Score: 2060.5
#
#
#=======================================
BSNT_04408___ 1 ATGAGTGAGATCGC---------AAG--GGACGTTCATGTGAAACAG--- 36
|||||.||..|.|| ||| .||| |..||||||| ||
BL01358___amy 1 ATGAGCGAATTAGCTAAAGAAAAAAGTCTGAC--TATTGTGAAA-AGTAA 47
BSNT_04408___ 37 ----------GTTAAGCCAAAAAAGCAGTCCTCACTTTGGTGGATGTACA 76
||.|.| |||||.|.| ||.||.|||||||||||..
BL01358___amy 48 AAGGAGATATGTGAGG--AAAAATGGA----TCGCTCTGGTGGATGTATC 91
BSNT_04408___ 77 TTCCTGCTTTG------CTCTCCGTTCTGGTCTTTATGATTTATCCGTTT 120
||||.||.||| .|.||| |||||||||||||||||||||
BL01358___amy 92 TTCCCGCCTTGGCGCTTGTATCC------GTCTTTATGATTTATCCGTTT 135
BSNT_04408___ 121 GTGAAAGGCACATT--GATTACCTTTACAAACTGGAACGGCTTTTCACAA 168
|.||..|| |||| .||.||.||.||.|||||||||||.||.|||| |
BL01358___amy 136 GCGAGCGG--CATTAAAATCACGTTCACGAACTGGAACGGTTTCTCAC-A 182
BSNT_04408___ 169 GTC-TACCAATGGGTTGGATTCGCGCAATATGAAAGGCTGTTTTCTGATC 217
||| ||..|.|||.|.||.||.||.||||||.||.||.||.|..|.||.|
BL01358___amy 183 GTCGTATGACTGGATCGGCTTTGCCCAATATAAACGGATGCTGGCCGACC 232
BSNT_04408___ 218 CTGACACTTGGCATATCTTAAAAAACACGCTGCTTTACGGGCTTGGCAGC 267
|.|..||.||||.|.||.|.||||||||.||.||.|||||..|.|||||.
BL01358___amy 233 CGGCGACATGGCTTGTCGTCAAAAACACCCTCCTGTACGGATTGGGCAGT 282
BSNT_04408___ 268 ACTTTTTTTCAAAATGTGGTCGGGCTTCTATACGC---TCTGCTCTTAAA 314
||..||||.||.|||||..||||.|||||.||.|| .|||||.||
BL01358___amy 283 ACGGTTTTCCAGAATGTCATCGGTCTTCTCTATGCCCTCCTGCTGTT--- 329
BSNT_04408___ 315 TCAAAGCATTAAAACGAAAGCGGTAACAAGAACAATTGTGTATTTGCCGG 364
|.|||||||.||||.|||||||.|.||||||||..||||.||||||||.|
BL01358___amy 330 TAAAAGCATCAAAATGAAAGCGCTGACAAGAACGGTTGTCTATTTGCCCG 379
BSNT_04408___ 365 TGATGATCAGCCCGCTCATTATGGGCTACATTTGGTACTTTTTCTTCTCC 414
|.||.|||||||||||.||.|||||.||.||.||||||||.|||||||||
BL01358___amy 380 TCATCATCAGCCCGCTGATCATGGGGTATATCTGGTACTTCTTCTTCTCC 429
BSNT_04408___ 415 TATGACGGAGGCGCGCTCAATGATTTGCT--------------CGGG--- 447
|||||.||||||||..|.||.|||||||| |.||
BL01358___amy 430 TATGAAGGAGGCGCCTTGAACGATTTGCTGAAACTATTTGGAGCAGGTCC 479
BSNT_04408___ 448 -GTCTTCGGC---ATCAGCCC---TATTAATGCG------CTCG------ 478
|||..||.| |.|||||| .||.|||.|| .|||
BL01358___amy 480 TGTCAACGCCTTGAGCAGCCCGGAAATCAATCCGTGGATCATCGTATTTG 529
BSNT_04408___ 479 ----------CCAGTCCCTCG--ATCGCTATGGTTGTCTACTTAGCCGGT 516
.||||...||| ||.||.|||||..|.||.|||||.|||
BL01358___amy 530 TCAATTCCTATCAGTTTGTCGGTATAGCGATGGTCATTTATTTAGCAGGT 579
BSNT_04408___ 517 CTGCAAAGCATTCCGAAAGACTACTATGAAGCGGCGCAAATGGATGGCGC 566
||...||||.||||||||||.|..|||||||||||||||||.||.||.||
BL01358___amy 580 CTCGGAAGCGTTCCGAAAGATTTTTATGAAGCGGCGCAAATCGACGGAGC 629
BSNT_04408___ 567 GAAACAAGGC------CAGCAGTTTTTTACCATCACGCTGCCGCTGTTAA 610
|.|| |||||.||||..|..||.||||||||||||||.|
BL01358___amy 630 ------AAGCGGTTTTCAGCAATTTTGGAAGATTACGCTGCCGCTGTTGA 673
BSNT_04408___ 611 TGCCCTCCATTACCATTAATATGGTCATCAACATTATCGGAGGCTTAAAG 660
||||.||..|.||.||.||.|||||.|||||.||.|||||.||..|.|||
BL01358___amy 674 TGCCTTCTGTCACGATCAACATGGTAATCAATATCATCGGCGGACTGAAG 723
BSNT_04408___ 661 CTGTTTGACGTCATCATTGCACTCACCGCTGGCGGCCCCGGAAATGCGTC 710
||||||||.|||||..|.||.||.||.|..|||||.||.||||||||.||
BL01358___amy 724 CTGTTTGATGTCATTTTAGCGCTGACAGGCGGCGGTCCGGGAAATGCTTC 773
BSNT_04408___ 711 ACAATCCATGTCCACGTTTATGTATGATTTGTATTTCAAACGGCAGGATG 760
.|||||.|||||.||.||||||||.|||.|||||||.||..|||||||||
BL01358___amy 774 GCAATCGATGTCGACTTTTATGTACGATCTGTATTTTAAGAGGCAGGATG 823
BSNT_04408___ 761 CCGGCTATGCCGCAACGCAAGGCATATTTATGGCATTTGTCATTTTGATC 810
||||||||||.||..|.||.||..|.||.|||||..|..|.||..||.|.
BL01358___amy 824 CCGGCTATGCAGCCGCTCAGGGGGTTTTCATGGCGGTGTTGATACTGCTA 873
BSNT_04408___ 811 ATCAGCTTTTGCGCGCTTGCGTACTTTAAAAGAAAGGAGACGGAAATGTC 860
|||||||||...||.||....||.|||||..|.|||||| |||
BL01358___amy 874 ATCAGCTTTACGGCTCTCATCTATTTTAAGCGCAAGGAG--------GTC 915
BSNT_04408___ 861 ATGA------- 864
||
BL01358___amy 916 --GAAGCCTAG 924
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