Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_04948 and BL00706

See DNA alignment / Visit BSNT_04948 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:08
# Commandline: needle
#    -asequence pep-align/BSNT_04948.1.5803.seq
#    -bsequence pep-align/BL00706___yvrH.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_04948-BL00706___yvrH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_04948-BL00706___yvrH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04948
# 2: BL00706___yvrH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 253
# Identity:     170/253 (67.2%)
# Similarity:   198/253 (78.3%)
# Gaps:          16/253 ( 6.3%)
# Score: 877.0
# 
#
#=======================================

BSNT_04948         1 MKKTVTERNIKVENASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEE     50
                                :|||:|||||||.|||.|:||||.|||:..:|.|:||||
BL00706___yvr      1 -----------MENATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEE     39

BSNT_04948        51 AIPVVKANKVDLIVLDVMMGGMSGFEACTLIREYSDAPIFFLTARSSDAD    100
                     |:.:||.:.|.||:|||||.|.:||:....||.:::||||||||::||.|
BL00706___yvr     40 ALDIVKKDTVHLILLDVMMPGQTGFDVSPEIRRHTNAPIFFLTAKTSDLD     89

BSNT_04948       101 KLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQSKE---TSSNQTYTY    147
                     ||||||.|||||||||||||||.|||:|||||||..||   .|.:..|.|
BL00706___yvr     90 KLSGFAYGADDYITKPFNPLELIARIKAHLKRTYIHKEVAAASVSSAYEY    139

BSNT_04948       148 DYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEKVW    197
                     :.|.|.|..|||||.||.|:|||||||||||||:|||.||||||||||||
BL00706___yvr    140 ERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKDQIYEKVW    189

BSNT_04948       198 GYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPEGKR    247
                     |.|||||:|||||||||||||||:|||:||||||:|||||:|:|||..|.
BL00706___yvr    190 GVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPNPARKE    239

BSNT_04948       248 S--    248
                     |  
BL00706___yvr    240 SEG    242


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.