Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_06292 and BL00113

See DNA alignment / Visit BSNT_06292 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:15
# Commandline: needle
#    -asequence pep-align/BSNT_06292___rnpA.1.5803.seq
#    -bsequence pep-align/BL00113___rnpA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06292___rnpA-BL00113___rnpA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06292___rnpA-BL00113___rnpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06292___rnpA
# 2: BL00113___rnpA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 119
# Identity:      87/119 (73.1%)
# Similarity:   100/119 (84.0%)
# Gaps:           3/119 ( 2.5%)
# Score: 432.0
# 
#
#=======================================

BSNT_06292___      1 MKKRNRLKKNEDFQKVFKHGTSVANRQFVLYTLDQPENDELRVGLSVSKK     50
                     ||||||||||||||||||.|.|:||||:|||.|.|||..|.|||||||||
BL00113___rnp      1 MKKRNRLKKNEDFQKVFKKGKSMANRQYVLYVLHQPEAKEFRVGLSVSKK     50

BSNT_06292___     51 IGNAVMRNRIKRLIRQAFLEEKERLK-EKDYIIIARKPASQLTFEETKKS     99
                     |||||:|||:||||||...||:..|| |.||||||||||::|::||||||
BL00113___rnp     51 IGNAVVRNRVKRLIRQVIQEERNLLKQENDYIIIARKPAAELSYEETKKS    100

BSNT_06292___    100 LQHLFRKSSLYKKSSSK--    116
                     ||||||||.:|:|..::  
BL00113___rnp    101 LQHLFRKSFVYRKKPNQPS    119


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.