Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06292 and BL00113
See
Amino acid alignment /
Visit
BSNT_06292 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:15
# Commandline: needle
# -asequence dna-align/BSNT_06292___rnpA.1.5803.seq
# -bsequence dna-align/BL00113___rnpA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06292___rnpA-BL00113___rnpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06292___rnpA-BL00113___rnpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06292___rnpA
# 2: BL00113___rnpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 388
# Identity: 261/388 (67.3%)
# Similarity: 261/388 (67.3%)
# Gaps: 65/388 (16.8%)
# Score: 912.0
#
#
#=======================================
BSNT_06292___ 1 TTGAAGAAGCGAAATCGTTTAAAGAAAAATGAAGATTTTCAAAAAGTGTT 50
.||||.|||||||||||.|||||||||||||||||||||||||||||.||
BL00113___rnp 1 ATGAAAAAGCGAAATCGATTAAAGAAAAATGAAGATTTTCAAAAAGTATT 50
BSNT_06292___ 51 TAAACATGGGACATCAGTTGCAAACCGCCAGTTTGTCTTATATACGCTTG 100
||||.|.||.|.|||..|.||||||||.||.|.|||.||||||..||||.
BL00113___rnp 51 TAAAAAGGGAAAATCGATGGCAAACCGGCAATATGTTTTATATGTGCTTC 100
BSNT_06292___ 101 ATCAGCCTGAA---AATGATGAACTGCGTGTCGGG-----CTTTCCGTCA 142
|.||||||||| ||.|| ||.||||| ||.||.||||
BL00113___rnp 101 ACCAGCCTGAAGCGAAAGA--------GTTTCGGGTGGGACTGTCGGTCA 142
BSNT_06292___ 143 GCAAAAAAATTGGCAATGCTGTGATGCGAAATCGGATCAAACGTTTGATT 192
||||.|||||.||.||.||.||..||||.||.|||.|.||.||..|||||
BL00113___rnp 143 GCAAGAAAATCGGAAACGCAGTCGTGCGCAACCGGGTAAAGCGGCTGATT 192
BSNT_06292___ 193 CGGCAGGCCTTTCTTGAAGAG-----------AAAGAGAGACTGAAGGAA 231
||.||||.|.|.|..|||||| ||| || |.|||
BL00113___rnp 193 CGCCAGGTCATCCAGGAAGAGCGGAATCTATTAAA-----AC---AAGAA 234
BSNT_06292___ 232 AAGGATTACATCATTATTGCCAGAAAACCGGCGAGCCAGCTGA-----CA 276
||.||.|||||.||.||.||.|||||.||.| ||||||| ||
BL00113___rnp 235 AATGACTACATTATCATCGCAAGAAAGCCTG-----CAGCTGAATTATCA 279
BSNT_06292___ 277 TTTGAGGAAACGAAAAAAAGTTTGCAGCATCTATTCAGAAAGTCTTCATT 326
|.|||.||.|||||||||||||||||||||||.|||||||||||.| ||
BL00113___rnp 280 TATGAAGAGACGAAAAAAAGTTTGCAGCATCTTTTCAGAAAGTCGT--TT 327
BSNT_06292___ 327 ATATA----AGAAATCTTCG---------TCAAAGTAG 351
.|.|| |.|||.| || |||.||
BL00113___rnp 328 GTCTACCGGAAAAAAC--CGAATCAGCCATCATAG--- 360
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.