Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06291 and RBAM_038140

See Amino acid alignment / Visit BSNT_06291 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:44
# Commandline: needle
#    -asequence dna-align/BSNT_06291___spoIIIJ.1.9828.seq
#    -bsequence dna-align/RBAM_038140___spoIIIJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06291___spoIIIJ-RBAM_038140___spoIIIJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06291___spoIIIJ-RBAM_038140___spoIIIJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06291___spoIIIJ
# 2: RBAM_038140___spoIIIJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 788
# Identity:     653/788 (82.9%)
# Similarity:   653/788 (82.9%)
# Gaps:          13/788 ( 1.6%)
# Score: 2715.0
# 
#
#=======================================

BSNT_06291___      1 TTGTTGAAAAGGAGAATAGGGTTGCTATTAAGTATGGTTGGCGTAT--TC     48
                        |||||||||||||||.||||.|||.|.||||||||.|  ||||  ||
RBAM_038140__      1 ---TTGAAAAGGAGAATATGGTTACTACTGAGTATGGTCG--GTATGCTC     45

BSNT_06291___     49 ATGCTTTTGGCTGGATGCTCGAGTGTGAAAGAGCCGATTACTGCAGATAG     98
                     .||||..||||.||.||||||||||||||||||||||||||.||..||||
RBAM_038140__     46 GTGCTGCTGGCCGGGTGCTCGAGTGTGAAAGAGCCGATTACGGCGAATAG     95

BSNT_06291___     99 TCCGCATTTCTGGGACAAGTACGTAGTATATCCATTGTCTGAGCTCATTA    148
                     ||||||||||||||||||.||.||.||.|||||||||||.||..||||||
RBAM_038140__     96 TCCGCATTTCTGGGACAAATATGTTGTGTATCCATTGTCAGAAGTCATTA    145

BSNT_06291___    149 CGTATGTAGCGAAATTGACGGGAGATAACTACGGGCTTTCAATTATTCTA    198
                     ||||.|||||||||.|||||||.||||||||.||..|.||.||.||..|.
RBAM_038140__    146 CGTACGTAGCGAAACTGACGGGCGATAACTATGGTTTATCGATCATCATC    195

BSNT_06291___    199 GTTACCATTTTAATTCGTTTATTAATTTTACCGCTGATGATTAAGCAGCT    248
                     |||||.||||||||||||.|..|.|||.|.|||||||||||.||||||||
RBAM_038140__    196 GTTACGATTTTAATTCGTCTGCTGATTCTGCCGCTGATGATCAAGCAGCT    245

BSNT_06291___    249 GAGAAGTTCGAAAGCGATGCAGGCTTTACAGCCGGAAATGCAAAAGCTTA    298
                     ..||||.||.||||||||||||||..|.|||||.||||||||.|||||.|
RBAM_038140__    246 TCGAAGCTCAAAAGCGATGCAGGCGCTGCAGCCTGAAATGCAGAAGCTCA    295

BSNT_06291___    299 AAGAAAAATACAGCTCAAAGGATCAAAAAACGCAGCAAAAGCTTCAGCAG    348
                     .|||||||||||||||.||.|||||||||||||||||.||||||||||||
RBAM_038140__    296 GAGAAAAATACAGCTCTAAAGATCAAAAAACGCAGCAGAAGCTTCAGCAG    345

BSNT_06291___    349 GAAACAATGG--CTTTATTCCAAAAGCATGGTGTCAATCCATTGGCGGGA    396
                     |||||.||||  ||.|.|||  ||||||.||.||.||.||..||||||||
RBAM_038140__    346 GAAACGATGGCCCTGTTTTC--AAAGCACGGGGTAAACCCGCTGGCGGGA    393

BSNT_06291___    397 TGTTTCCCGATTTTGATCCAGATGCCGATTTTAATTGGATTCTATCATGC    446
                     ||||||||.||..||||.||.|||||||||||.||.||||||||.||.||
RBAM_038140__    394 TGTTTCCCAATCCTGATTCAAATGCCGATTTTGATCGGATTCTACCACGC    443

BSNT_06291___    447 GATCATGAGAACCCAGGCGATTTCAGAGCATAGCTTCTTATGGTTTGACT    496
                     .||.|||.|.||.||.||.||||||.||||.|||||.||||||||||||.
RBAM_038140__    444 CATTATGCGTACGCAAGCCATTTCACAGCACAGCTTTTTATGGTTTGACC    493

BSNT_06291___    497 TAGGAGAAAAAGATCCTTACTATATTCTTCCTATCGTTGCCGGTGTCGCT    546
                     |||||||.||.||||||||||||||||||||||||||||||||.||.||.
RBAM_038140__    494 TAGGAGAGAAGGATCCTTACTATATTCTTCCTATCGTTGCCGGGGTGGCC    543

BSNT_06291___    547 ACATTTGTTCAGCAAAAACTGATGATGGCGGGCAATGCGCAGCAAAATCC    596
                     ||.|||||.|||||.||.|||||||||||.||.|||.||...||.|||||
RBAM_038140__    544 ACTTTTGTCCAGCAGAAGCTGATGATGGCCGGAAATCCGACTCAGAATCC    593

BSNT_06291___    597 GCAAATGGCGATGATGCTTTGGATTATGCCAATTATGATTATCGTATTTG    646
                     .||||||||.||||||.|.|||||||||||.||.||||||||||||||||
RBAM_038140__    594 TCAAATGGCAATGATGGTATGGATTATGCCGATCATGATTATCGTATTTG    643

BSNT_06291___    647 CGATCAACTTCCCG-GCGGCTCTTTCTCTTTATTGGGTAGTCGGTAACTT    695
                     |||||||||||||| || ||.||||||||.||||||||||||||.|||.|
RBAM_038140__    644 CGATCAACTTCCCGAGC-GCGCTTTCTCTGTATTGGGTAGTCGGAAACCT    692

BSNT_06291___    696 GTTTATGATTGCGCAAACTTTCCTCATTAAAGGACCTGATATTAAAAAAA    745
                     ||||||||||||.||.||.|||||.||||||||||||||.||||||.|..
RBAM_038140__    693 GTTTATGATTGCTCAGACATTCCTTATTAAAGGACCTGACATTAAACACG    742

BSNT_06291___    746 ATCCTGAGCCGCAAAAAGCCGGAGGAAAGAAAAAGTGA    783
                     ||||.||..||||.|||||.||||||||||||||||||
RBAM_038140__    743 ATCCGGAAACGCAGAAAGCGGGAGGAAAGAAAAAGTGA    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06291 and RBAM_038140

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
