Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06281 and RBAM_038080

See Amino acid alignment / Visit BSNT_06281 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:44
# Commandline: needle
#    -asequence dna-align/BSNT_06281___soj.1.9828.seq
#    -bsequence dna-align/RBAM_038080___soj.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06281___soj-RBAM_038080___soj.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06281___soj-RBAM_038080___soj.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06281___soj
# 2: RBAM_038080___soj
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 763
# Identity:     635/763 (83.2%)
# Similarity:   635/763 (83.2%)
# Gaps:           2/763 ( 0.3%)
# Score: 2651.0
# 
#
#=======================================

BSNT_06281___      1 GTGGGAAAAATCATAGCAATTACGAACCAAAAAGGCGGGGTCGGCAAAAC     50
                     ||||||||||||||||||||||||||||||||||||||.|||||.||.||
RBAM_038080__      1 GTGGGAAAAATCATAGCAATTACGAACCAAAAAGGCGGAGTCGGGAAGAC     50

BSNT_06281___     51 AACGACGTCTGTCAACCTTGGGGCATGTTTGGCTTACATAGGGAAAAGGG    100
                     .|||||.|||||.||.||.|||||.||.||||||||||||||.|||||||
RBAM_038080__     51 GACGACTTCTGTTAATCTGGGGGCTTGCTTGGCTTACATAGGTAAAAGGG    100

BSNT_06281___    101 TTCTGCTGGTAGATATTGATCCGCAGGGAAATGCGACAAGCGGATTAGGG    150
                     ||||.||.||.|||||||||||||||||.|||||.||.||||||||||||
RBAM_038080__    101 TTCTTCTTGTTGATATTGATCCGCAGGGCAATGCAACGAGCGGATTAGGG    150

BSNT_06281___    151 ATTGAAAAAGCCGATGTAGAGCAGTGTGTGTACGATATTTTAGTAGATGA    200
                     |||||||||||||||||.||.||.|||||||||||.||||||||||||||
RBAM_038080__    151 ATTGAAAAAGCCGATGTGGATCATTGTGTGTACGACATTTTAGTAGATGA    200

BSNT_06281___    201 TGCAGATGTAATAGATATTATTAAAGCAACGACAGTAGAGAACTTGGATG    250
                     |||||||||.|.|||||||||||||.|.||..|||||||||||||.||||
RBAM_038080__    201 TGCAGATGTTACAGATATTATTAAACCGACTTCAGTAGAGAACTTAGATG    250

BSNT_06281___    251 TGATTCCTGCGACGATTCAGCTTGCCGGGGCTGAGATCGAGCTGGTTCCT    300
                     |.|||||.||.|||||.||||||||.||.||.||.|||||..|||||||.
RBAM_038080__    251 TCATTCCGGCCACGATCCAGCTTGCGGGAGCGGAAATCGAATTGGTTCCG    300

BSNT_06281___    301 ACAATATCAAGAGAAGTGAGATTGAAGAGAGCGCTTGAAGCAGTAAAGCA    350
                     ||.||.|||.|.||.||.||..||||.|||||..|.|||.||||.||.||
RBAM_038080__    301 ACGATCTCACGGGAGGTCAGGCTGAAAAGAGCATTAGAATCAGTGAAACA    350

BSNT_06281___    351 AAATTATGATTATATTATCATTGATTGTCCGCCGTCATTGGGCTTGCTGA    400
                     ||||||.|||||.||.||.|||||||||||.|||||..|.||.||..|.|
RBAM_038080__    351 AAATTACGATTACATGATTATTGATTGTCCTCCGTCTCTCGGGTTATTAA    400

BSNT_06281___    401 CGATTAACGCCCTTACTGCCTCGGATTCCGTTGTGATTCCTGTACAGTGC    450
                     |||||||.||.|||||.||.||.|||||.||.||.||.||.||.||||||
RBAM_038080__    401 CGATTAATGCGCTTACCGCTTCAGATTCAGTCGTTATCCCGGTTCAGTGC    450

BSNT_06281___    451 GAATATTATGC-CTTGGAGGGGCTCAGCCAGTTATTAAATACAGTACGTC    499
                     |||||.||.|| ||| ||.||..|.||.||.||||||||||||||.||.|
RBAM_038080__    451 GAATACTACGCTCTT-GAAGGATTGAGTCAATTATTAAATACAGTTCGGC    499

BSNT_06281___    500 TTGTGCAAAAGCATTTGAATACTGATTTAATGATTGAAGGTGTATTGCTG    549
                     ||||||||||.|||||.|||||.||.||||||||.|||||.||..|.|||
RBAM_038080__    500 TTGTGCAAAAACATTTAAATACCGACTTAATGATAGAAGGAGTGCTTCTG    549

BSNT_06281___    550 ACAATGCTTGATGCCCGGACAAACCTTGGCATTCAAGTGATTGAAGAGGT    599
                     ||.||||||||||||.|.||.||.||.||||||||||||||.||||||||
RBAM_038080__    550 ACGATGCTTGATGCCAGAACGAATCTCGGCATTCAAGTGATAGAAGAGGT    599

BSNT_06281___    600 TAAAAAGTATTTTAGGGATAAAGTATATAAGACAGTTATTCCGCGTAATG    649
                     .||.||.||.|||||.||||||||.|||.|.||..||||.||.||.||||
RBAM_038080__    600 AAAGAAATACTTTAGAGATAAAGTGTATCAAACCATTATCCCTCGAAATG    649

BSNT_06281___    650 TCCGTCTGAGTGAGGCACCGAGTCACGGAAAACCCATCATTTTATACGAT    699
                     |||||.|.||||||||.|||||||||||.||.||.|||||.|||||||||
RBAM_038080__    650 TCCGTTTAAGTGAGGCGCCGAGTCACGGCAAGCCGATCATATTATACGAT    699

BSNT_06281___    700 CCGCGGTCAAGAGGTGCGGAAGTATATTTAGATTTAGCAAAGGAAGTGGC    749
                     |||||.||.|||||||||||||||||||||||||||||||||||||||||
RBAM_038080__    700 CCGCGTTCGAGAGGTGCGGAAGTATATTTAGATTTAGCAAAGGAAGTGGC    749

BSNT_06281___    750 TGCGAATGGCTAA    762
                     .||||||||||||
RBAM_038080__    750 AGCGAATGGCTAA    762


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