Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_06277 and RBAM_038040

See Amino acid alignment / Visit BSNT_06277 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:43
# Commandline: needle
#    -asequence dna-align/BSNT_06277___yyaD.1.9828.seq
#    -bsequence dna-align/RBAM_038040___yyaD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06277___yyaD-RBAM_038040___yyaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06277___yyaD-RBAM_038040___yyaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06277___yyaD
# 2: RBAM_038040___yyaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1029
# Identity:     764/1029 (74.2%)
# Similarity:   764/1029 (74.2%)
# Gaps:          36/1029 ( 3.5%)
# Score: 2822.0
# 
#
#=======================================

BSNT_06277___      1 GTGTTGTGGAGAGCCGGAATGAAGTGGATGCTGCTCATATTAGGGAGCCT     50
                                       ||||||||||||||||||||||||.|.||||.
RBAM_038040__      1 ------------------ATGAAGTGGATGCTGCTCATATTAAGCAGCCA     32

BSNT_06277___     51 GATTGGGGCCGGATATGCGAGCGGTCAGGAGATATGGCAGTTTTTTGGGG    100
                     |||||||||.||||||||.|||||.|||||.||||||||||||||.||.|
RBAM_038040__     33 GATTGGGGCTGGATATGCAAGCGGGCAGGAAATATGGCAGTTTTTCGGTG     82

BSNT_06277___    101 CGGAAAGCGGACTTGCTATTGTGCTGTTTACAATTATGTTCATTTTCTCG    150
                     ..|||||||||||.||||||||..||||||||.|.|||||.|...|.|||
RBAM_038040__     83 TCGAAAGCGGACTGGCTATTGTATTGTTTACAGTCATGTTTACGATTTCG    132

BSNT_06277___    151 TCTTATATTGTGATGAAAATCAGTTTTAAAGTTCAATCCACTCATTTTCT    200
                     .|||||||||||.||||.|||||.|.|...||||||||.||.||.|||.|
RBAM_038040__    133 GCTTATATTGTGTTGAAGATCAGCTATCGGGTTCAATCAACGCACTTTTT    182

BSNT_06277___    201 GCCGGTTCTGGAGCATTTAATGGGGCCATGG--CTGGCGAAAATTTATGA    248
                     .||.||.||.||||||.|.||||||||  ||  ||.||.|||.|.|||||
RBAM_038040__    183 ACCTGTGCTTGAGCATCTGATGGGGCC--GGCTCTTGCTAAAGTCTATGA    230

BSNT_06277___    249 TGTCCTCATCATTTTTTATTTGTTTTCGACGACTATGGTGATGATTGCCG    298
                     |||.||.||.||.||||||||||||||.|.|||.|||||.||||||||||
RBAM_038040__    231 TGTGCTTATTATGTTTTATTTGTTTTCAATGACGATGGTTATGATTGCCG    280

BSNT_06277___    299 GAGGCGGTGTGACCCTGCAAATGTACAAGCTTCCTTTCTGGTGGGGAATC    348
                     |.|||||||||||.|||||||||||||||||.||.||.|||...||.||.
RBAM_038040__    281 GCGGCGGTGTGACGCTGCAAATGTACAAGCTGCCATTTTGGATCGGTATT    330

BSNT_06277___    349 ACGCTGATTTGTATTGTGACAGTGTGTTTGTTTTTGTGGGATGTGAAAGG    398
                     ...||..||||.||||||||.||..||||.||.||.||||||.|.|||||
RBAM_038040__    331 TTTCTTCTTTGCATTGTGACTGTCGGTTTATTCTTTTGGGATATAAAAGG    380

BSNT_06277___    399 AATATTATCTATAAATAGTATTTTGATTCCTGTGTTAGTAGCGGGGCTTT    448
                     ||||.|||||.|.||||||||||||||.||..|..|.|||||||||||.|
RBAM_038040__    381 AATACTATCTCTGAATAGTATTTTGATACCGATTCTTGTAGCGGGGCTGT    430

BSNT_06277___    449 TATATGCGCTGATCTCCTTTCAGAGCACACATCACCATACGTGGACGATT    498
                     |||||||..||.|||..|||||||..||.|||||..|.|||||||||||.
RBAM_038040__    431 TATATGCATTGGTCTTTTTTCAGACAACCCATCATTACACGTGGACGATA    480

BSNT_06277___    499 GATTTGTCCCAGCAGTATAACTGGCCTGCGAGCATTACGTTTACCTCTTT    548
                     ||||||.|||..||||||||.|||||.||.||||||||.||.||.||.||
RBAM_038040__    481 GATTTGACCCGCCAGTATAATTGGCCGGCAAGCATTACCTTCACGTCCTT    530

BSNT_06277___    549 AAACATCCTTTCAGTTGTTGCGATTTTATCCTCTGTTGGGAAAGAGATGA    598
                     ||||||||||||.|||||.||..||.|.||.||..|.||.|||||.||||
RBAM_038040__    531 AAACATCCTTTCTGTTGTCGCTGTTCTTTCTTCAATCGGAAAAGATATGA    580

BSNT_06277___    599 AAGGGCTCGGAGAAGCAAAAATCGCAAGTGTGGCAAGCGGTCTTATTTTT    648
                     |.||.||.||||||||.|||||||||||.||.||||||||.||.|||||.
RBAM_038040__    581 AGGGACTGGGAGAAGCGAAAATCGCAAGCGTTGCAAGCGGGCTGATTTTC    630

BSNT_06277___    649 GGCGTGATCTCATTTGTTTATAATGAAACGTTGGTGGAGCTGGCGGGCTC    698
                     ||..||||.|||||||||||.|||||||||.|.||..||||..|.|||..
RBAM_038040__    631 GGTATGATTTCATTTGTTTACAATGAAACGCTTGTACAGCTTTCAGGCAG    680

BSNT_06277___    699 CCTTTCTCAGTTTGAAATACCGCTGTTTGCCGTTCTGGAGGGTGCGCCTT    748
                     .|||.|.||.|.|||.||.||.||.||.|||||.||.||.||.||.||||
RBAM_038040__    681 TCTTACACAATATGAGATTCCTCTTTTCGCCGTCCTTGAAGGCGCTCCTT    730

BSNT_06277___    749 ATTTCC--TTTTTTTATGTATGACGGCGGTGCTGTGCCTGGCGATTTACA    796
                     |  |||  |.|||.|.||||||.|.||.|||||.|...|.||.||.||.|
RBAM_038040__    731 A--TCCGTTATTTCTTTGTATGGCCGCCGTGCTTTTTTTAGCCATCTATA    778

BSNT_06277___    797 CGACGACGGTAGCAGGTTTGCTGGGGCTGTCCAGCCGGCTGATGGCGTTT    846
                     ||||.||.||..|.|||.||.|.||||||||||||||..||.|.||.|||
RBAM_038040__    779 CGACAACCGTGACCGGTCTGTTCGGGCTGTCCAGCCGCATGCTTGCATTT    828

BSNT_06277___    847 ATTCATATGCCTAGATGGATGATTGTGTTGATTTTGTTAG-TGTTAATGG    895
                     .|..|..||||.|||||||.|.|.||.|...||.|.|||| || |.||||
RBAM_038040__    829 GTGAAATTGCCGAGATGGACGCTCGTATCTCTTCTTTTAGCTG-TGATGG    877

BSNT_06277___    896 TACCTTTTACTTCTTTCGGATTTTCTGATTTGATCGCGTTCTTGTATCCG    945
                     |.||||||||..|..||||.|||||.||||||||||||.|.||.|||||.
RBAM_038040__    878 TGCCTTTTACGACAATCGGTTTTTCAGATTTGATCGCGATTTTATATCCC    927

BSNT_06277___    946 ATATATGGGATGCTCAATTTGTATTTGTTAGTTTGTCTGC-TCTTATATC    994
                     ||.||.|||.|..|.|.|.|.||||||.|.||.|||||.| |||| ||.|
RBAM_038040__    928 ATTTACGGGCTTTTAAGTCTTTATTTGCTGGTATGTCTTCTTCTT-TACC    976

BSNT_06277___    995 CTATTTTGAGTAAATGGAAATAA------   1017
                     |||||||..|.|.|||||||.||      
RBAM_038040__    977 CTATTTTAGGGAGATGGAAAAAAGTATAA   1005


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06277 and RBAM_038040

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
