Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00352 and RBAM_037960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_00352___adaB.1.9828.seq
# -bsequence dna-align/RBAM_037960___adaB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00352___adaB-RBAM_037960___adaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00352___adaB-RBAM_037960___adaB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00352___adaB
# 2: RBAM_037960___adaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 619
# Identity: 359/619 (58.0%)
# Similarity: 359/619 (58.0%)
# Gaps: 140/619 (22.6%)
# Score: 874.5
#
#
#=======================================
BSNT_00352___ 1 ATGGAAACAAATAAA---CCAACCCTTTATTGG----TCTTTACTAATGT 43
||| |.|||| ||.|...|.|||||| ||||.|| |.|
RBAM_037960__ 1 ATG------AGTAAAGAGCCTATGATCTATTGGACACTCTTCAC--ACG- 41
BSNT_00352___ 44 TCAAGGATTGGAATTTTTATATTGCTTCAACTTTAAAGGGGCTTGTG-TT 92
.||.|||||||...|.||||..||..|.||.|..||||||||| || ||
RBAM_037960__ 42 -GAATGATTGGAGCCTGTATACAGCCGCCACATCTAAGGGGCTT-TGCTT 89
BSNT_00352___ 93 TGTAGGTTCACAGAACAAACCAATCGAGGAATTG-TTCGAA--------- 132
|.||||.||| ||||..|||| | ||.|||
RBAM_037960__ 90 TATAGGGTCA-----------AATCATGGAA--GCTTTGAAGAGCTTGAG 126
BSNT_00352___ 133 ---TGGGCTAAGAAA-------CGC-TTTCCAGGAAGTCTTCTTGTTGAA 171
|||||.||.||| ||| .|.|| || ||| |.|
RBAM_037960__ 127 CAGTGGGCAAAAAAATCACTGCCGCAATACC--GA-------TTG--GCA 165
BSNT_00352___ 172 ---GATGATGATAAGCTTGAACCCTATGCTGTTGAAATCACTCAATATCT 218
||||||||.|||||.|..||.||..|.||.||..|..|..|.||..|
RBAM_037960__ 166 CGTGATGATGAAAAGCTGGCGCCTTACACGGTAGAGCTGTCCGAGTACAT 215
BSNT_00352___ 219 AGAAGGAAA--GCGGAAAAACTTTACTGTTC----CAGTTGAG-----TA 257
.|| ||| ||.||..|.|||| ||| |.|||| | ||
RBAM_037960__ 216 TGA---AAATGGCAGATCAGCTTT----TTCCGTGCCGTTG-GATCTTTA 257
BSNT_00352___ 258 CGCCGGTACGCAATTTCAGCTAGCCGTCTGGAATGCACTT-TGTGAAATT 306
|||.||..||||||||||.||.||.|||||.||.||| || ||.||.
RBAM_037960__ 258 ---CGGGACAGAATTTCAGCTTGCTGTATGGAAAGCGCTTATG-GACATA 303
BSNT_00352___ 307 CCTTATGGACAGACGAAATCCTATTCCGACATTGC--AAATGATATAAAT 354
||.||.||..||||..|.||||||||.||.||.|| ||||| ||..|.
RBAM_037960__ 304 CCGTACGGCGAGACATACTCCTATTCGGATATAGCAAAAATG--ATTCAG 351
BSNT_00352___ 355 AAACCAGCAGCTGTTCGTGCTGTAGGTGCGGCTATTGGGGCTAATCCGGT 404
|||||.|||||.||..|.||.||.||.||.||.|||||....||||||||
RBAM_037960__ 352 AAACCGGCAGCCGTAAGAGCCGTGGGCGCTGCGATTGGAAAAAATCCGGT 401
BSNT_00352___ 405 ATTAATTACTGTACCGTGCCATCGTGTAATAGGAAAGAATGGCTCATTAA 454
|||.|||||.||.|||||||||||.||.||.|||||.||.||...|.|.|
RBAM_037960__ 402 ATTGATTACGGTTCCGTGCCATCGCGTCATCGGAAAAAACGGGAAACTGA 451
BSNT_00352___ 455 CTGGCTATC-GGGGCGGATTTGAAATGAAGACACTGCTCCTCG-ATCT-- 500
|.||.| || |.|||||.||.||||||||.|..|.|||.||.| || |
RBAM_037960__ 452 CCGGAT-TCAGAGGCGGTTTAGAAATGAAAAAGCAGCTGCTGGCAT-TAG 499
BSNT_00352___ 501 -----GGAAAAGCGAGCTTCATCTGAAA---TGGA--------TGTTCC- 533
||||| ||| ||||| |||| ||..||
RBAM_037960__ 500 AGGGCGGAAA---------CAT-TGAAACACTGGAATACCGGCTGAGCCG 539
BSNT_00352___ 534 -----------TCA-TTGA 540
||| .|||
RBAM_037960__ 540 GACAGGAGGGATCACATGA 558
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