Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06267 and RBAM_037950

See Amino acid alignment / Visit BSNT_06267 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:43
# Commandline: needle
#    -asequence dna-align/BSNT_06267___exoA.1.9828.seq
#    -bsequence dna-align/RBAM_037950___exoA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06267___exoA-RBAM_037950___exoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06267___exoA-RBAM_037950___exoA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06267___exoA
# 2: RBAM_037950___exoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 783
# Identity:     567/783 (72.4%)
# Similarity:   567/783 (72.4%)
# Gaps:          48/783 ( 6.1%)
# Score: 1949.0
# 
#
#=======================================

BSNT_06267___      1 ATGAAGTTGATTTCATGGAATGTAAACGGCCTGCGGGCTGTGATGAGAAA     50
                     |||||..|||||||.|||||||||||||||.||||.||.|||||||.|||
RBAM_037950__      1 ATGAAACTGATTTCTTGGAATGTAAACGGCTTGCGTGCCGTGATGAAAAA     50

BSNT_06267___     51 AATGGATTTCCTCTCTTATTTGAAAGAAGAGGATGCAGATATTATATGTC    100
                     |||.|||.||....||||..|..|.|||..||..||.||||||.||||||
RBAM_037950__     51 AATAGATATCAATACTTACGTTCAGGAAACGGCAGCGGATATTCTATGTC    100

BSNT_06267___    101 TTCAGGAAACGAAGATACAGGACGGCCAGGTTGATC--TCCAGCCTGAAG    148
                     |.||.|||||.||..||||||||||.||.||  |||  |.||||||||||
RBAM_037950__    101 TGCAAGAAACAAAAGTACAGGACGGACAAGT--ATCATTACAGCCTGAAG    148

BSNT_06267___    149 GCTATCATGTGTACTGGAATTATGCAGTTAAAAAAGGATATTCCGGCACA    198
                     |.|||||.|..||.|||||.|||||.||.||||||||.||.||.|||||.
RBAM_037950__    149 GATATCACGCCTATTGGAACTATGCGGTGAAAAAAGGCTACTCAGGCACG    198

BSNT_06267___    199 GCTGTTTTTTCTAAGCAAGAACCGCTGCAGGTCATCTACGGTAT-CGGAT    247
                     |||||||||||.||..||.|.||||||||.||..||||.||..| .||||
RBAM_037950__    199 GCTGTTTTTTCGAAAGAAAAGCCGCTGCACGTGCTCTATGGACTGGGGAT    248

BSNT_06267___    248 TAGAAGAGCATGACCAAGAAGGCAGAGTGATTACGCTGGAATTTGAAAAC    297
                     | ||.||.|||||.||||||||..|.|||||.|||||.||||||||..|.
RBAM_037950__    249 T-GACGACCATGATCAAGAAGGACGGGTGATCACGCTTGAATTTGAGCAT    297

BSNT_06267___    298 GTGTTTGT-GATAACTGTTTACACGCCCAATTCCAGAAGGGGATTAGAGC    346
                     |||||||| |..||||| |||.|||||.|||.|||.|.|.||||||||||
RBAM_037950__    298 GTGTTTGTCGTCAACTG-TTATACGCCGAATGCCAAACGCGGATTAGAGC    346

BSNT_06267___    347 GGATTGATTACCGCATGCAATGGGAAGAGGCTTTACTGTCTTATATTCTT    396
                     |.|||||||||||..|.||||||||||..|.|||...|..||||.|.| .
RBAM_037950__    347 GAATTGATTACCGTCTTCAATGGGAAGCCGATTTTAAGGATTATCTGC-A    395

BSNT_06267___    397 GAA--TTGGATCAGAAAAAACCAGTGATTTTATGCGGTGATTTGAATGTA    444
                     |||  || ||.|.||||||.||.|||||.||||||||.|||.|||||||.
RBAM_037950__    396 GAAGCTT-GACCGGAAAAAGCCCGTGATCTTATGCGGCGATCTGAATGTC    444

BSNT_06267___    445 GCCCATCA-GGAGATTGATTTGAAAAATCCAAAGGCGAACCGGAATAACG    493
                     ||.|| || ||||||.||.||.||||||||.||.||.||||||||.||||
RBAM_037950__    445 GCACA-CAGGGAGATAGACTTAAAAAATCCGAAAGCCAACCGGAAGAACG    493

BSNT_06267___    494 CTGGATTTTCAGATCAAGAAAGAGAGGCATTCA-CTCGTTTCTTAGAA-G    541
                     |.||.||.||.||.||.||..|.||.||.|||| |.|..|.||  ||| |
RBAM_037950__    494 CCGGTTTCTCGGAGCAGGAGCGGGAAGCGTTCAGCGCCCTGCT--GAACG    541

BSNT_06267___    542 CTGGTTTTGTTGATTCTTTCCGTCATGTTTATCCTGATCTTGAAGGCGCT    591
                     |.||.|||...||.||.|||||..||.|.||||||||.|..||||||||.
RBAM_037950__    542 CGGGATTTACCGACTCATTCCGCTATTTATATCCTGACCAGGAAGGCGCC    591

BSNT_06267___    592 TATTCCTGGTGGTCGTATCGTGCCGG-----CGCCCGGGACAGAAATATT    636
                     ||||||||||||||.||     |.||     |||.||.||.|.|||.||.
RBAM_037950__    592 TATTCCTGGTGGTCTTA-----CAGGACGAACGCACGTGAGAAAAACATC    636

BSNT_06267___    637 GGATGGCGGATTGATTATTTTGTTGTTTCTGAAAGACTTAAGGAACAGAT    686
                     ||.||||||.|||||||..|..|||||||.||.|||||.|||.|.|.|||
RBAM_037950__    637 GGTTGGCGGCTTGATTACGTCATTGTTTCAGACAGACTGAAGCAGCGGAT    686

BSNT_06267___    687 TGAAGATGCCAG---------CATATCAGCGGATGTCATGGGTTCCGACC    727
                              |||         |||.|..||.|||.||||||||||.||||
RBAM_037950__    687 ---------CAGCCAAGCGGCCATTTGTGCCGATATCATGGGTTCTGACC    727

BSNT_06267___    728 ATTGTCCTGTTGAACTTATCA-TCAATATATGA    759
                     ||||.|||||||||.|.| || |..||.|||||
RBAM_037950__    728 ATTGCCCTGTTGAAATGA-CAGTGGATTTATGA    759


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06267 and RBAM_037950

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
