Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06259 and RBAM_037920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:42
# Commandline: needle
# -asequence dna-align/BSNT_06259___yyaJ.1.9828.seq
# -bsequence dna-align/RBAM_037920___yyaJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06259___yyaJ-RBAM_037920___yyaJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06259___yyaJ-RBAM_037920___yyaJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06259___yyaJ
# 2: RBAM_037920___yyaJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1374
# Identity: 1041/1374 (75.8%)
# Similarity: 1041/1374 (75.8%)
# Gaps: 60/1374 ( 4.4%)
# Score: 3960.5
#
#
#=======================================
BSNT_06259___ 1 ATGAATACGATCTTCAAACAAAAGAATACACATC---CTTTCTCAAACGC 47
|.||| ||||| |.||||||||.|.
RBAM_037920__ 1 ---------------------ATGAA---ACATCAGACATTCTCAAATGT 26
BSNT_06259___ 48 AGCGAATCGTTTAGACCGCCTTCCGATTTCACGCGTTCATTTCCAAGTGT 97
||||||.||.||||||||.||.||.||||||||.||.||||..|||||.|
RBAM_037920__ 27 AGCGAACCGATTAGACCGTCTCCCCATTTCACGTGTGCATTATCAAGTAT 76
BSNT_06259___ 98 TAACCGCTCTCGGCATTGTTTATTTCTTTGATCTCGCAGATTTATTTACC 147
|||||||||||||.||..|.|||||.|||||||||||.|||.|.|||||.
RBAM_037920__ 77 TAACCGCTCTCGGAATCATCTATTTTTTTGATCTCGCTGATCTGTTTACG 126
BSNT_06259___ 148 CTCAGCAATGTAGCGCCGGCACTGATTGAACATTGGGGCATCCCGCTTTC 197
||||||||.||.||.|||||.||||||||.|||||||||.|...|||.||
RBAM_037920__ 127 CTCAGCAACGTGGCTCCGGCGCTGATTGAGCATTGGGGCGTGAAGCTGTC 176
BSNT_06259___ 198 AACTATTGCTAACGTAACGGCTGCTTCGTTTTTAGGCATGTTTTTAGGCG 247
.||.|||||..||.|.|||||.||.||.||..|.||||||||||||||||
RBAM_037920__ 177 CACCATTGCCGACATCACGGCCGCATCCTTCCTGGGCATGTTTTTAGGCG 226
BSNT_06259___ 248 CTTCACTGGGCGGACGGCTGTCCGATCGAATCGGCCGCAAAAAAGC-CTT 296
|.||..|.||||||.|||||||||||||.||||||.|.|||||||| ||.
RBAM_037920__ 227 CGTCCATCGGCGGAAGGCTGTCCGATCGGATCGGCAGGAAAAAAGCGCTG 276
BSNT_06259___ 297 AAATCTATTTGTCTTTGTTTTCTCAATCGCATCGCTATGC--AATGCTGC 344
||.|.| ||||||.||||.||.||.|||.||| ||.|.| ||||| ||
RBAM_037920__ 277 AATTGT-TTTGTCCTTGTCTTTTCGATCTCAT--CTTTTCTGAATGC-GC 322
BSNT_06259___ 345 -GGCATGGGACATTCCATCTTTAATGACATTCCGTTTTCTCACCGGATTT 393
|||||||||||||||.||.|||||||..|||||.||..|.|||||..|.
RBAM_037920__ 323 TGGCATGGGACATTCCGTCCTTAATGATTTTCCGCTTCTTGACCGGTCTC 372
BSNT_06259___ 394 GGCGTTGCAGCCGCCATGGTCATTACGAATAGCTATTTGGCGGAATTTTT 443
|||||.||.|||||||||.|..|.|||||.||||||||||||||||||||
RBAM_037920__ 373 GGCGTCGCGGCCGCCATGATTGTGACGAACAGCTATTTGGCGGAATTTTT 422
BSNT_06259___ 444 CCCTTCAAGTGTACGTGGAAAATATATTTCTTTTTGTGCCATGATTGGAT 493
.||.||...||||||.||||||||.||.||..||||.||||||||.|||.
RBAM_037920__ 423 TCCATCCTCTGTACGGGGAAAATACATCTCCCTTTGCGCCATGATCGGAC 472
BSNT_06259___ 494 TGATCGGGGTGCCGATCACCAACATTGTGTCTGCCTTTGTCATTCCTCTT 543
|.|||||.||.||..||||.|||.||||.||.||.||||||||||||.|.
RBAM_037920__ 473 TAATCGGCGTTCCCGTCACAAACGTTGTTTCCGCTTTTGTCATTCCTTTA 522
BSNT_06259___ 544 GGTTCATGGGGATGGAGGCTAGTATTTGTATGGGGTGCCGTCGGCCTTAT 593
||.||||||||.|||.||||.|||||.||||||||.||.|.|||.||.||
RBAM_037920__ 523 GGCTCATGGGGGTGGCGGCTCGTATTCGTATGGGGGGCGGCCGGTCTCAT 572
BSNT_06259___ 594 TTATTTTTTCTTTATTCGACGGCTGGAAGAGTCGCCTCGCTGGCACGAAA 643
||||||.||.|||||.||.|||||.||.||.|||||.|||||||||||||
RBAM_037920__ 573 TTATTTCTTTTTTATCCGCCGGCTTGAGGAATCGCCGCGCTGGCACGAAA 622
BSNT_06259___ 644 ATCGCGGGGAATATGCGAAAGCCGATGCGATCCTCAACCGAATTGAGGCA 693
||||.||.|.|||||...|.||..|.||.||..|.|||||..||||.|||
RBAM_037920__ 623 ATCGGGGCGCATATGATCAGGCAAACGCCATTATGAACCGTCTTGAAGCA 672
BSNT_06259___ 694 CAGGTTGAAAAGGAGAAAGGCCCGCTTCCGGCAGCATCCCAGCCTAAAGT 743
|..|..||.||.||.||||||||||||||.|| |||.||||
RBAM_037920__ 673 CGTGCAGAGAAAGAAAAAGGCCCGCTTCCCGC---------GCCAAAAG- 712
BSNT_06259___ 744 AAGCG----------AAACTGTTAAGCAGCATGCAGGTTACGCCGGCTTA 783
|.||| |.||.|| |.||||.|||||.|||...||..|.
RBAM_037920__ 713 AGGCGGCAGAAGTACATACAGT---GAAGCACGCAGGCTACTTAGGGCTG 759
BSNT_06259___ 784 TTGAAAGGCAGAAACCTCAAAATCACCATCGTATTATCAGCTGTATGGAT 833
||..|.|||||.||..|.||.|||||||||.|..|.|||||.||||||||
RBAM_037920__ 760 TTTCAGGGCAGGAATTTAAAGATCACCATCATCCTGTCAGCGGTATGGAT 809
BSNT_06259___ 834 TTTTGAAACGTTTGGGTTTTACGGATTTGCTTCATGGGTTCCAAGCCTGC 883
|.|||||||.|||||.||||||||.||||||||||||||.||.|||||||
RBAM_037920__ 810 TCTTGAAACCTTTGGCTTTTACGGCTTTGCTTCATGGGTGCCCAGCCTGC 859
BSNT_06259___ 884 TAAAAAGCAATGGCGTAACCATGGAAAATACATTATGGTATAACGTATTG 933
|.||||||||.|||.|.|||||||||||.||..|.|||||.||.||..|.
RBAM_037920__ 860 TGAAAAGCAACGGCATCACCATGGAAAAAACGCTGTGGTACAATGTGCTT 909
BSNT_06259___ 934 CATTCCGTCGGCGCTCCACTTGGCGCACTGCTCGGCTCCATGATTTCCGA 983
||.||.||||||||.||.|||||||||.|||||||.||||||||.|||||
RBAM_037920__ 910 CACTCTGTCGGCGCGCCGCTTGGCGCATTGCTCGGTTCCATGATATCCGA 959
BSNT_06259___ 984 AAGATTTCAAAGAAAATGGATTTTAGCTGCGAGTGCGTTTCTGACGGCCA 1033
||..||.|||||.|||||||||.|.||.||.||.||.||||||||.||||
RBAM_037920__ 960 AACGTTCCAAAGGAAATGGATTCTGGCCGCAAGCGCCTTTCTGACTGCCA 1009
BSNT_06259___ 1034 TCGCCGGGCTCTTATATGGTATGACTTTTATTCCCATCATGATCATTGTA 1083
|.|||||.||.|||||.||.|||||.|||||||||.|||||||.|||||.
RBAM_037920__ 1010 TTGCCGGACTGTTATACGGCATGACGTTTATTCCCCTCATGATTATTGTG 1059
BSNT_06259___ 1084 TTTGGTTTTATCGTGAATATCACAGAACGGGTCTTTACCTCGAACTTATA 1133
|||||.|||.||||.||..||||.||||||.||||.|||||.||..||||
RBAM_037920__ 1060 TTTGGGTTTGTCGTTAACGTCACGGAACGGATCTTCACCTCAAATCTATA 1109
BSNT_06259___ 1134 CGCCTATACATCTGAACCTTATCCGACTGAATACCGCTCGTCTGGCAGCG 1183
||||||.|||||.|||||.|||||.||.|||||.||||||.|.||.||||
RBAM_037920__ 1110 CGCCTACACATCGGAACCGTATCCTACGGAATATCGCTCGGCCGGGAGCG 1159
BSNT_06259___ 1184 GTTTAGCCTATGGTCTTGGCCGTTTTTCAAACATTTTTGGCTCATTGCTT 1233
|..|.||.|||||.||.|||||||||||.|||||.||.|||||..||||.
RBAM_037920__ 1160 GGCTGGCGTATGGGCTCGGCCGTTTTTCCAACATATTCGGCTCCCTGCTC 1209
BSNT_06259___ 1234 GTCGGATTTATTGCCGTTCAGCTCGGCTATATCAGCGTCTTCTTATTTAT 1283
||||||||||||||||||.||||||||||.|||||||||||.||.||.||
RBAM_037920__ 1210 GTCGGATTTATTGCCGTTAAGCTCGGCTACATCAGCGTCTTTTTGTTCAT 1259
BSNT_06259___ 1284 TGGGGGCTGCTGGCTCGCT-TGCTCCTTGCTGTTAATCTTCTTCGGTCCT 1332
.||.||||||||||| .|| ||.|||.|..||||||||.|||||||.||.
RBAM_037920__ 1260 CGGCGGCTGCTGGCT-TCTATGTTCCGTTTTGTTAATCCTCTTCGGCCCG 1308
BSNT_06259___ 1333 AATACGAATGCAAAACAGATTTAA 1356
||.||.||||||.|.||.||||||
RBAM_037920__ 1309 AAAACAAATGCACAGCAAATTTAA 1332
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