Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06258 and RBAM_037910
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:42
# Commandline: needle
# -asequence dna-align/BSNT_06258___yyaK.1.9828.seq
# -bsequence dna-align/RBAM_037910___yyaK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06258___yyaK-RBAM_037910___yyaK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06258___yyaK-RBAM_037910___yyaK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06258___yyaK
# 2: RBAM_037910___yyaK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1003
# Identity: 611/1003 (60.9%)
# Similarity: 611/1003 (60.9%)
# Gaps: 185/1003 (18.4%)
# Score: 1742.0
#
#
#=======================================
BSNT_06258___ 1 TTGAAAGGAAGAGACATAGAAGGAATGAATTCATTTATCCGTCCTATAGA 50
||||||.|.|||.|.||.||...|||
RBAM_037910__ 1 ------------------------ATGAATACGTTTGTACGGCCCGCAGA 26
BSNT_06258___ 51 AGGAAACAATACGT-TGTGGAGATATTTTTTCGCTTTTTTGGTGATGGTA 99
.|||||.|||| || |.|.|||||||.||.|..||.|.|||||.||.||
RBAM_037910__ 27 GGGAAAAAATA-GTGTATCGAGATATCTTCTTTCTCTGTTGGTCATTGT- 74
BSNT_06258___ 100 GGGTTATATG----TATTCGGGAATATAGCTTACC---TTTTCGCTATAC 142
||||| || |.|||||.|..||| ||.||| ||| ||||
RBAM_037910__ 75 GGGTT---TGTTCTTTTTCGGAAGCATA-CTGACCGTGTTT----TATA- 115
BSNT_06258___ 143 TGT---TCACGGTTAT----TGTGAATCC--CAATATCACGTTTGATTTG 183
||| ||||| | |.|.||||| || .|.|||.|..|||.|
RBAM_037910__ 116 TGTTTCTCACG----TCCGCTTTCAATCCTTCA--CTGACGATAAATTGG 159
BSNT_06258___ 184 GATGAAGCTGTGC--TGAGTGATCCTCTCGTAGATCTTTATTTGTCCCAT 231
|||||.| |.|| |.|||||.||.||.|..|||.|||||||....|||
RBAM_037910__ 160 GATGAGG--GGGCATTAAGTGACCCGCTGGCGGATATTTATTTACAGCAT 207
BSNT_06258___ 232 GTGATTTATTTATTCGCCATTCCGGGAGTTTGGCTGGCTGTGCGCTTTAT 281
.|..|.|||||..|.||.||||||||..|||||.|.||.||.||.||.||
RBAM_037910__ 208 ATCGTCTATTTCATAGCGATTCCGGGCATTTGGATAGCGGTTCGTTTCAT 257
BSNT_06258___ 282 TTTGAAGCGGCCTTTCCGAACTGTGATTACACCAAAT---TCAAAGATGA 328
|.||||.||||..||...|.|..|.||.||||||||| || |.|||
RBAM_037910__ 258 TATGAAACGGCGGTTTTTATCCATCATCACACCAAATCAGTC---GCTGA 304
BSNT_06258___ 329 ATTGGCGGAGAATTTCCTTTGGTTTTATT----GCTTATTTCTTGCTGAT 374
|.|||..|||.||||.|||||| ||| .|.|||.|..|||||||
RBAM_037910__ 305 ACTGGAAGAGGATTTTCTTTGG----ATTCGGCACATATGTTGTGCTGAT 350
BSNT_06258___ 375 G---ATCGCCGTACAATTGATTGATTTTGCGATTCATCCTGATAGCTATT 421
| .||||.|..| |||||||||||.|.||||||||.|||.| ||
RBAM_037910__ 351 GTTTGTCGCGGGGC---TGATTGATTTTACAATTCATCCGGATCG---TT 394
BSNT_06258___ 422 CAATG---CAGGAGTTTAATGCCTCACGCTTTATCTG--GCTGCTAGCGG 466
..||| |||||.||..||||.||||| ||.|||| ||||.||||||
RBAM_037910__ 395 TCATGCTTCAGGAATTCCATGCTTCACG--TTTTCTGCTGCTGTTAGCGG 442
BSNT_06258___ 467 CTGCCCTCATTTTGGTTCCGATTCAGACATCAGCTGAGGAA-CTGTTTTT 515
|.|||.||.|.|||||.||||||||.||.||.||.|||||| .|.|.|||
RBAM_037910__ 443 CGGCCGTCTTGTTGGTGCCGATTCAAACCTCTGCGGAGGAATTTCTCTTT 492
BSNT_06258___ 516 CAGGGGATTTTTGCTTCAAGCTTT---CGGGAGATTGACGAAAAATCCTC 562
| |.||.|||.||||||| .|| |||.|.|||||||..||||.|..
RBAM_037910__ 493 C-GCGGTTTTCTGCTTCA---GTTCGCCGGAAAATTGACGGCAAATGCGG 538
BSNT_06258___ 563 TATTTTTGACACTGATTGTCGGAGGATTGTTTGGCGTATTGCATTTTGCG 612
...||.|||||.|.|||.||||.|||||.||.||||.|.|.|||||.|..
RBAM_037910__ 539 CGGTTCTGACAGTCATTATCGGCGGATTATTCGGCGCACTTCATTTCGGA 588
BSNT_06258___ 613 AATCCAGAAATGAACAATGGCGCTGTCTGGGCAGGAATTGAGTATTTAAC 662
|||||.||.|||.|.|||||.|||.|||||||.|||||.|..|||.|.||
RBAM_037910__ 589 AATCCGGAGATGGATAATGGGGCTCTCTGGGCGGGAATCGGATATATCAC 638
BSNT_06258___ 663 ATTTGGTTTTGTGTGGACCTATTA-CACGATTAAAACTGGAAGCATCGAA 711
..|.||..|..|.||||||| ||| ||||||||||||.||.||..|.||.
RBAM_037910__ 639 CATCGGCATGATCTGGACCT-TTATCACGATTAAAACGGGCAGTCTGGAG 687
BSNT_06258___ 712 ATATCACTTGGCGCCCATGCCGCGAATAATATGTTTTTGTGTATGTTTAT 761
||.||.|||||||..||.||.||.||||||||||||||.|.|||.|||.|
RBAM_037910__ 688 ATGTCTCTTGGCGGTCACGCTGCCAATAATATGTTTTTATTTATCTTTCT 737
BSNT_06258___ 762 TACAGAAAAAAACAGT--GTGTATGGAGGAATTCCTTCTCTCTTTACGGT 809
.|||| |..|.||.| |||||.||.||.|||||.||..|.|||||
RBAM_037910__ 738 CACAG--AGGATCATTCGGTGTACGGCGGCATTCCGTCGATATTTAC--- 782
BSNT_06258___ 810 TACGCGGGGGAAC-----CCGATGTGGGAGGCTTT---CTTTACGATAGC 851
||| || ||.||||.| .|.||.|||.||
RBAM_037910__ 783 ----------AACAGCAGCC------GGCGGCTATGAAATATATGATTGC 816
BSNT_06258___ 852 --------------GGTCAATCTTGTGTTTGCGGGGATCGC-------TT 880
|.|||||.|..|.||.||..||.|||| ||
RBAM_037910__ 817 ATATCGACTCTGGTGATCAATATCATCTTCGCATGGCTCGCATTCCGTTT 866
BSNT_06258___ 881 TATGGTACCATAAGAAATCAAAAAG-TAAGCAGCA--------AGGGTCT 921
|.|| .|||||| .|||||||| ||
RBAM_037910__ 867 TGTG--------------AAAAAAGAAAAGCAGCAGGCCGCCTAG----- 897
BSNT_06258___ 922 TAA 924
RBAM_037910__ 897 --- 897
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