Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06256 and RBAM_037900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:42
# Commandline: needle
# -asequence dna-align/BSNT_06256___yyaL.1.9828.seq
# -bsequence dna-align/RBAM_037900___yyaL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06256___yyaL-RBAM_037900___yyaL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06256___yyaL-RBAM_037900___yyaL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06256___yyaL
# 2: RBAM_037900___yyaL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2130
# Identity: 1422/2130 (66.8%)
# Similarity: 1422/2130 (66.8%)
# Gaps: 300/2130 (14.1%)
# Score: 4990.5
#
#
#=======================================
BSNT_06256___ 0 -------------------------------------------------- 0
RBAM_037900__ 1 ATGCCAAATAATAGTAAGCCCAACAGCTTAATCACGGAGAAGTCCCCCTA 50
BSNT_06256___ 0 -------------------------------------------------- 0
RBAM_037900__ 51 TCTGCTCCAACACGCCCACAACCCCGTAAACTGGCATCCTTGGGGAAAAG 100
BSNT_06256___ 0 -------------------------------------------------- 0
RBAM_037900__ 101 AAGCCTTCGAAAAAGCAAAACGCGAAAACAAGCCGGTTCTTGTCAGCATC 150
BSNT_06256___ 1 ------------------------------ATGGCCCACGAAAGCTTTGA 20
|||||.|||||...||||||
RBAM_037900__ 151 GGCTATTCGACGTGTCACTGGTGCCACGTAATGGCTCACGAGTCCTTTGA 200
BSNT_06256___ 21 AGATGAAGAAATCGCGCGTCTTCTCAATGAACGGTTTGTGGCGATTAAAG 70
.||.|||||.|||||..||.|.||.||.||....||..|.||.||.||.|
RBAM_037900__ 201 GGACGAAGAGATCGCCGGTATGCTAAACGATAAATTCATAGCCATCAAGG 250
BSNT_06256___ 71 TCGACCGGGAAGAGCGGCCGGATGTGGATTCTGTTTATATGAGAATCTGC 120
|.||.||.||.||||||||.|||||||||||.||.|||||||||||||||
RBAM_037900__ 251 TTGATCGTGAGGAGCGGCCTGATGTGGATTCCGTGTATATGAGAATCTGC 300
BSNT_06256___ 121 CAGCTGATGACCGGGCAGGGCGGCTGGCCGCTGAATGTGTTTATCACGCC 170
|||||||||||.|||||||||||.|||||||||||.|||||..||||.||
RBAM_037900__ 301 CAGCTGATGACGGGGCAGGGCGGGTGGCCGCTGAACGTGTTCGTCACCCC 350
BSNT_06256___ 171 TGATCAGAAGCCGTTTTACGCGGGTACATATTTTCCAAAGACGAGCAAAT 220
.|||||||||||||||||.|||||.|||||||||||.|||||||||||||
RBAM_037900__ 351 AGATCAGAAGCCGTTTTATGCGGGGACATATTTTCCGAAGACGAGCAAAT 400
BSNT_06256___ 221 TCAATCGTCCCGGTTTTGTTGATGTGCTTGAGCATCTGTCTGAGACGTTT 270
|.||.|||||.||.|||.|.|||||||||||.||||||||.||.||||||
RBAM_037900__ 401 TTAACCGTCCGGGCTTTATCGATGTGCTTGAACATCTGTCCGAAACGTTT 450
BSNT_06256___ 271 GCGAACGACCGCGAGCATGTCGAGGATATTGCGGAGAACGCCGCTAAACA 320
|||||.|||||..||||||||||||||||.||.||.||||||||....||
RBAM_037900__ 451 GCGAATGACCGGCAGCATGTCGAGGATATCGCCGAAAACGCCGCCGCTCA 500
BSNT_06256___ 321 T-TTGCAGACCAAAA----CAGCCGCCAAATCAGGCGAAGGC---CTTAG 362
| |||.||.| || ||.|||.| |||.||| |||.|
RBAM_037900__ 501 TCTTGAAGTC---AAGGTTCACCCGAC--------CGAGGGCATGCTTGG 539
BSNT_06256___ 363 CGAGTCA-GCGATTCACCGGACA--TTCCAGCAGCTTGCCAGCGGGTTTG 409
||| .|| |||.|||| .|||| |..|..|||||.|||.|||||||||
RBAM_037900__ 540 CGA-ACAGGCGGTTCA--TGACACGTATCGCCAGCTGGCCGGCGGGTTTG 586
BSNT_06256___ 410 ATACGATCTACGGCGGTTTCGGGCAGGCACCGAAATTTCCGATGCCCCAT 459
||||..|.||||||||.|||||.|||||.|||||||||||||||||.|||
RBAM_037900__ 587 ATACAGTGTACGGCGGGTTCGGCCAGGCTCCGAAATTTCCGATGCCGCAT 636
BSNT_06256___ 460 ATGCTGATGTATTTGCTTCGTTATCATCA-CAATACGGGGCAGGAGAACG 508
|||||.||||.|.|||||||.|| |..|| |.|||||||..||||..|.|
RBAM_037900__ 637 ATGCTCATGTTTCTGCTTCGCTA-CTACAGCTATACGGGCAAGGAACAGG 685
BSNT_06256___ 509 CTTTATACAACGTGACGAAAACGCTGGACAGCATGGCGAATGGCGGCATT 558
||||...|..|||.||.||.||.||.|||.||||||||||.|||||.|||
RBAM_037900__ 686 CTTTGGCCGGCGTAACCAAGACACTCGACGGCATGGCGAACGGCGGAATT 735
BSNT_06256___ 559 TACGATCATATCGGCTATGGGTTCGCCCGCTATTCGACCGATGACGAGTG 608
|..||.||.|||||.||.||.||.||||||||.|||||.|||.|.||.||
RBAM_037900__ 736 TTTGACCACATCGGGTACGGCTTTGCCCGCTACTCGACTGATAATGAATG 785
BSNT_06256___ 609 GCTCGTTCCCCATTTTGAAAAAATGCTGTACGACAATGCGCTGCTGCTGA 658
||||||.||.||||||||.|||||||||||.|||||.||.||.||.||||
RBAM_037900__ 786 GCTCGTGCCGCATTTTGAGAAAATGCTGTATGACAACGCCCTTCTCCTGA 835
BSNT_06256___ 659 CCGCTTATACAGAAGCCTATCAGGTCAC-GCAAAACAGCCGCTATAAAGA 707
||||.||||||||||||||.||.||||| |..||..|| |||||.|||.|
RBAM_037900__ 836 CCGCATATACAGAAGCCTACCAAGTCACGGGTAATGAG-CGCTACAAACA 884
BSNT_06256___ 708 GATTTGTGA-GCAGATCATTACGTTCATTCAGAGGGAAATGACTCATGAA 756
|| |||.|| |||||||.|.|.|||.||||||.||||||||||.||||||
RBAM_037900__ 885 GA-TTGCGATGCAGATCGTAATGTTTATTCAGCGGGAAATGACGCATGAA 933
BSNT_06256___ 757 GACGGAAGCTTTTTCTCTGCTTTAGACGCGGATACAGAAGGAGAAGAAGG 806
|||||.|||||||||||.|||||||||||.|||||.|||||....||.||
RBAM_037900__ 934 GACGGCAGCTTTTTCTCAGCTTTAGACGCTGATACCGAAGGCCGTGAGGG 983
BSNT_06256___ 807 AAAGTACTACGTGTGGTCAAAGGAAGAAATTCTGAAAACGCTCGGGGACG 856
.||.||.|||.|.|||||.||..|||||||..||||....|||||.||.|
RBAM_037900__ 984 GAAATATTACATATGGTCCAAAAAAGAAATCATGAATCTTCTCGGTGATG 1033
BSNT_06256___ 857 ATCTCGGAACGCTGTATTGCCAAGTGTATGACATCACTGAAGAAGGAAAC 906
|.|||||..||||.||.|||.|.||||||.|||||||.||..||||.||.
RBAM_037900__ 1034 AACTCGGCCCGCTTTACTGCAAGGTGTATAACATCACAGATCAAGGCAAT 1083
BSNT_06256___ 907 TTTGAAGGCAAAAATATTCCTAACCTCA--TTCACACAAAGTGGGAACA- 953
|||||||||.||||.||.||..|||||| |||||.|...|||.|..||
RBAM_037900__ 1084 TTTGAAGGCGAAAACATCCCGCACCTCATTTTCACGCGGCGTGAGGCCAT 1133
BSNT_06256___ 954 AATCAAAGCCGATGCCGGGTTAACCGAAAAAGAGCTCAGTCTCAAA---C 1000
..||.|| ||..||||..|.||.|.|.|.||||| |.| |.|| |
RBAM_037900__ 1134 CCTCGAA---GAGACCGGCCTCACAGGACATGAGCT--GGC-CGAACGCC 1177
BSNT_06256___ 1001 TCGAAGAAGCAAG-ACAGCAGCTCTTGAAGACACGCGAGGAA--AGAACC 1047
|.|||||.||||| |||..|...||.|||| ||||.|.|| ||||.|
RBAM_037900__ 1178 TTGAAGAGGCAAGAACAAAATTGCTGGAAG---CGCGTGAAAACAGAAGC 1224
BSNT_06256___ 1048 TATCCGCATGTCGATGATAAAGTGCTTACCTCATGGAACGCGCTGATGAT 1097
|||||||||...|||||.||||||||.|||||||||||||||||.|||||
RBAM_037900__ 1225 TATCCGCATACAGATGACAAAGTGCTGACCTCATGGAACGCGCTCATGAT 1274
BSNT_06256___ 1098 CGCGGGTCTTGCGAAAGCGGCAAAGGTATACCAGGAACCGAAATATCTCA 1147
..|.||.||.||.|||||.||||||||||..||.||.||..|.|.|||||
RBAM_037900__ 1275 TACCGGGCTGGCAAAAGCCGCAAAGGTATTTCACGAGCCTGACTTTCTCA 1324
BSNT_06256___ 1148 GCCTAGCGAAAGAC-GCCATCACATTTATTGA----AAACAAATTAATCA 1192
||.|.|||.|| || ||.|||...|||.|.|| .|.| |||
RBAM_037900__ 1325 GCATGGCGGAA-ACAGCGATCCGCTTTCTCGAGCGGCACC-------TCA 1366
BSNT_06256___ 1193 T---CGACGGCCGTGTAATGGTCCGATATCGAGACGGCGAAGTGAAAAAC 1239
| .|||||.||.||.||||||||.|||||.||.|||||||||||||||
RBAM_037900__ 1367 TGCCGGACGGGCGCGTCATGGTCCGCTATCGCGAGGGCGAAGTGAAAAAC 1416
BSNT_06256___ 1240 AAAGGCTTTATCGACGATTACGCTTTTCTCCTATGGGCTTATCTGGATCT 1289
|||||.||||||||.|||||.|||||||||.|.|||||||||||.||.||
RBAM_037900__ 1417 AAAGGGTTTATCGATGATTATGCTTTTCTCATCTGGGCTTATCTTGAACT 1466
BSNT_06256___ 1290 CTATGAAGCTTCGTTTGATCTTTCTTATTTACAAAAAGCGAAGAAAC--- 1336
.||||||||....|||.|||..||||||.|.||.||||||| ||||
RBAM_037900__ 1467 GTATGAAGCGGGTTTTAATCCGTCTTATCTGCAGAAAGCGA--AAACGTT 1514
BSNT_06256___ 1337 -TG-ACAGACGATATCATCAGCT-----TATTTTGGGATGAGGAGCATGG 1379
|| ||| |.||| ||| |.||.||||||||...|||.||
RBAM_037900__ 1515 ATGTACA------AGCAT--GCTGGAGCTGTTCTGGGATGAACGGCACGG 1556
BSNT_06256___ 1380 CGGATTCTACTTCACCGGACACGATGCAGA-AGCCTTAATCGTACGGGAA 1428
.||.||||.|||.||.||..|.|||||.|| |.|||| .|.||..|||||
RBAM_037900__ 1557 AGGTTTCTTCTTTACGGGGAATGATGCTGAGACCCTT-CTTGTCAGGGAA 1605
BSNT_06256___ 1429 AAAGAAGTGTACGACGGCGCCGTGCCTTCCGGAAACAGTGTGGCGGCTGT 1478
|||||.||.||.|||||.||||||||||||||||||||.|.|||.||.||
RBAM_037900__ 1606 AAAGAGGTTTATGACGGGGCCGTGCCTTCCGGAAACAGCGCGGCTGCCGT 1655
BSNT_06256___ 1479 TCAGCTGCTGCGTCTCGGGCAAGTCACAGGCGACTCATCACTAATTGAAA 1528
.||||||||.||||||||.|...|.||.||.||...||||||.|||||||
RBAM_037900__ 1656 ACAGCTGCTTCGTCTCGGCCGCCTGACGGGTGATATATCACTGATTGAAA 1705
BSNT_06256___ 1529 AAGCAGAAACGATGTTTTCCGTGTTCAAGCCAGACATCGACGCGTATCCG 1578
||||.|||.|||||||||||||||||||.|..||.||.||.||.||||||
RBAM_037900__ 1706 AAGCCGAAGCGATGTTTTCCGTGTTCAAACGGGAAATAGAGGCCTATCCG 1755
BSNT_06256___ 1579 AGCGGCCATGCTTTCTTTATGCAAAGTGTATTAAGACATCTGATGCCTAA 1628
|||.||.|.||||||||.||||||||.|||.|...||||...|||||..|
RBAM_037900__ 1756 AGCAGCAACGCTTTCTTCATGCAAAGCGTACTGGCACATACAATGCCCCA 1805
BSNT_06256___ 1629 GAAAGAAATCGTGATTTTTGGAAGTGCAGACGATCCAGCCAGAAAACAAA 1678
.|||||||||||..||||.|||||...|||.||.||.|.||||||||...
RBAM_037900__ 1806 AAAAGAAATCGTTGTTTTCGGAAGGAAAGATGACCCGGACAGAAAACGTT 1855
BSNT_06256___ 1679 TCATAACAGAGCTCCAAAAAGCCTTTAA-----GCCTA-ACGACTCCATT 1722
||||....|.|||.| |..|||.|||.| ||||| ||| |||
RBAM_037900__ 1856 TCATTGAGGCGCTTC-AGGAGCATTTCACTCCCGCCTATACG-----ATT 1899
BSNT_06256___ 1723 CTGGTAGCAGAGCATCCTGATCAATGCAAAGACATTG-CGCCA------- 1764
||.|..|||||.|||||.| ||||..||| ||.||
RBAM_037900__ 1900 CTCGCCGCAGAACATCCGG---------AAGAGCTTGCCGGCATTTCTGA 1940
BSNT_06256___ 1765 -TTCGCGGCAGACTACCGCATCATAGACGGCAAAACAACCGTGTATATTT 1813
||.||.||.|..||.|..||.||.||.||.|..|||||.||.||.||||
RBAM_037900__ 1941 CTTTGCTGCGGGTTATCAAATGATCGATGGGAGGACAACGGTCTACATTT 1990
BSNT_06256___ 1814 GTGAAAACTTCGCCTGCCAGCAGCCGACAACGAATATCGAAGAAGCCATC 1863
|.||.||.||||||||||.|..||||||.|||.||||.||.|||||.||.
RBAM_037900__ 1991 GCGAGAATTTCGCCTGCCGGAGGCCGACGACGGATATTGATGAAGCGATG 2040
BSNT_06256___ 1864 CACACGTT---AATAAGCAGCAGGGATTAA 1890
.||||.|| |||.||||||||.|..||.
RBAM_037900__ 2041 AACACCTTACAAATCAGCAGCAGAGCCTAG 2070
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