Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00912 and RBAM_037780

See Amino acid alignment / Visit BSNT_00912 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:37
# Commandline: needle
#    -asequence dna-align/BSNT_00912___ydeO.1.9828.seq
#    -bsequence dna-align/RBAM_037780___ydeO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00912___ydeO-RBAM_037780___ydeO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00912___ydeO-RBAM_037780___ydeO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00912___ydeO
# 2: RBAM_037780___ydeO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 894
# Identity:     719/894 (80.4%)
# Similarity:   719/894 (80.4%)
# Gaps:          36/894 ( 4.0%)
# Score: 2945.0
# 
#
#=======================================

BSNT_00912___      1 ATGAATACAACCAAAAAACA------TAAGAAATTTAAAGCGAAAATGAT     44
                     ||||.|||||.|.|||||||      |||||||||.|.||.||||     
RBAM_037780__      1 ATGAGTACAATCGAAAAACAAAGACGTAAGAAATTCAGAGTGAAA-----     45

BSNT_00912___     45 TTTCCAAAT---------CATCATGGTTATCATTGGAGGAATCATAGCGG     85
                       ||  |||         |||||||||.|||||.||.|||||.||.||.|
RBAM_037780__     46 --TC--AATCGTACGGGCCATCATGGTCATCATCGGCGGAATTATTGCCG     91

BSNT_00912___     86 CGTATGGACTAGAAACAGTGCTCATTCCAAACAGTGTATCTGATGGAGGG    135
                     ||||||||||.|||||.||..|.|||||.||.|||||||||||.||.||.
RBAM_037780__     92 CGTATGGACTGGAAACCGTATTGATTCCGAATAGTGTATCTGACGGCGGT    141

BSNT_00912___    136 GTGACGGGTCTGAGCATCGTTGGTTCACAGCTATTCAACTTGCCGCTGGG    185
                     ||.||.||.||.|||||.||.|||||||||||.||..|.|||||.||.||
RBAM_037780__    142 GTAACCGGACTCAGCATTGTCGGTTCACAGCTGTTTCATTTGCCTCTTGG    191

BSNT_00912___    186 GATTTTGATTGCTGTGATCAACATTCCATTTGTCTGGTTAGGATATAAGC    235
                     |||.||.|||||.||||||||.||.||.||||||||||||||||||||||
RBAM_037780__    192 GATCTTAATTGCGGTGATCAATATACCGTTTGTCTGGTTAGGATATAAGC    241

BSNT_00912___    236 AAATTGGGAAAAGCTTTGCATTATTATCAATTATCGGAATCGTATCGCTT    285
                     ||||.||||||.|.|||||.||..|||||||||||||.||.||.||.|||
RBAM_037780__    242 AAATCGGGAAAGGTTTTGCGTTTCTATCAATTATCGGTATTGTCTCACTT    291

BSNT_00912___    286 GCCGCGGGGACAAGCTTTTTTCACCACACACCCGCTATCATAGAAGGAGA    335
                     ||||||||.||.||.|||||.|||||||||||.||||||||.||.|||||
RBAM_037780__    292 GCCGCGGGCACGAGTTTTTTCCACCACACACCGGCTATCATCGAGGGAGA    341

BSNT_00912___    336 TACCCTGTTAATTACCGTTGTCGGCGGGATTATCCTTGGATTCGGAATGG    385
                     .|||||||||||.||||||||||||||||||||.||.||.||.|||||||
RBAM_037780__    342 CACCCTGTTAATCACCGTTGTCGGCGGGATTATTCTCGGCTTTGGAATGG    391

BSNT_00912___    386 GGCTGGCGCTGCGTAATGGCGGCGCATTAGATGGAATTGACATGCTTGCT    435
                     |..||||..||||.||.|||||||||||||||||||||||.|||||.|||
RBAM_037780__    392 GATTGGCATTGCGCAACGGCGGCGCATTAGATGGAATTGATATGCTGGCT    441

BSNT_00912___    436 GTGCTGCTATCCCGAAAACTGCCATTCGGAACGAGCGATCTCATTCTATT    485
                     |||||.||.||.||.|||.||||.||.||.||||||||.||||||.||||
RBAM_037780__    442 GTGCTTCTGTCACGGAAATTGCCGTTTGGCACGAGCGACCTCATTTTATT    491

BSNT_00912___    486 CTTAAACCTATTTGTGTTTATTTTTGTTTCCACAGTATTTGGCTTACAAG    535
                     .||||||.|.||||||||||||||||||||....|||||.||..|.||||
RBAM_037780__    492 TTTAAACATGTTTGTGTTTATTTTTGTTTCTTTTGTATTCGGGCTGCAAG    541

BSNT_00912___    536 GGGCATTGCTTTCAGTCATTGCTTACTACATTGCATCCAAAGTGATTCAT    585
                     |.|||||||||||.||||||||||||||||||||.||.||.||.||||||
RBAM_037780__    542 GCGCATTGCTTTCCGTCATTGCTTACTACATTGCGTCTAAGGTCATTCAT    591

BSNT_00912___    586 GTTGTGGAGGAAGGCTTAAGCGGCTCTAAAACCTTTCAAATTATTACAAC    635
                     ||.||.|||||||||||||||||.||||||||.|||||.|||||.|    
RBAM_037780__    592 GTGGTTGAGGAAGGCTTAAGCGGTTCTAAAACATTTCAGATTATCA----    637

BSNT_00912___    636 CCAA----CCTGAATTAATGGTAGAGACAATACGTGATCAATTAGGCCGA    681
                     ||||    ||||.|||||||||||||||.||.|||||..||||.|||||.
RBAM_037780__    638 CCAATGAGCCTGCATTAATGGTAGAGACCATTCGTGAAGAATTGGGCCGG    687

BSNT_00912___    682 AGCGCCACATATAAAGAAGCTTACGGGGGTTTTTCCCACGAGAAATTTAA    731
                     |||||.||.|||||||||||.|||||.||||||||.||.||.|||||..|
RBAM_037780__    688 AGCGCTACTTATAAAGAAGCATACGGCGGTTTTTCTCATGAAAAATTCCA    737

BSNT_00912___    732 AGAAATCACATGTGTCATCAATCGTTTAGAAGAAACCAAACTAAAGGAAA    781
                     |||||||||||||||||||||.|||||.||||||||||||||.||.||||
RBAM_037780__    738 AGAAATCACATGTGTCATCAACCGTTTGGAAGAAACCAAACTGAAAGAAA    787

BSNT_00912___    782 TTATTAATGATATTGATAAATCCGCCTTTGTCACCGTATATGACGTAGCT    831
                     ||||||||||.|||||||||...||||||||.||.||||||||.||.||.
RBAM_037780__    788 TTATTAATGACATTGATAAACAAGCCTTTGTGACGGTATATGATGTCGCA    837

BSNT_00912___    832 GAAGTGAAGGGCAGCAATTTTAG--AAGTCTTAATCATCATTAA    873
                     |||||.||.|||||.|||||.||  |||||  .||.||||||||
RBAM_037780__    838 GAAGTAAAAGGCAGTAATTTCAGAAAAGTC--CATAATCATTAA    879


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00912 and RBAM_037780

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
