Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03836 and RBAM_037740
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_03836.1.9828.seq
# -bsequence dna-align/RBAM_037740___yybE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03836-RBAM_037740___yybE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03836-RBAM_037740___yybE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03836
# 2: RBAM_037740___yybE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1033
# Identity: 530/1033 (51.3%)
# Similarity: 530/1033 (51.3%)
# Gaps: 284/1033 (27.5%)
# Score: 1048.5
#
#
#=======================================
BSNT_03836 1 ATGGAATGGGAACA-ATTAGAGTACTTTCAAACTCTTGCTCGTATACAGC 49
|||||.|||.|.|| |||| |.||.|||||.||..|.||.|...|.||||
RBAM_037740__ 1 ATGGATTGGCATCAGATTA-ATTATTTTCAGACAGTGGCGCAAGTGCAGC 49
BSNT_03836 50 ATGTAAC--------CAAAGCTGCTGAAACGTTATCAATAACACAGCCAG 91
||.|.|| ||||.|.|||| ||.|||.|.|||||.|
RBAM_037740__ 50 ATATTACACAGGCAGCAAAACAGCTG--------TCCATATCTCAGCCCG 91
BSNT_03836 92 CACTTTCTCGGTCTATTGTTAGAT--------TAGAAAATCACTTAGGTG 133
| ||||.|.| |||.||| |.|||.|..|..|.||.|
RBAM_037740__ 92 C----TCTCAGCC----GTTCGATTTCAAAGCTTGAAGACGAGCTGGGCG 133
BSNT_03836 134 TTCCGCTTTTTGATAGACAAGGCCGGTCCATTAAATTAAATAAATATGGG 183
|||.||||||||||.|..|||||.||...|||.|.||.|||...||.|||
RBAM_037740__ 134 TTCAGCTTTTTGATCGCAAAGGCAGGAATATTTATTTGAATCGGTACGGG 183
BSNT_03836 184 GAAATATT----CCTCAAGAGGGTTGATTCCATGATTCGAGAATATA-CA 228
.||||.|| |.|| |.||.|| |.|||.|| ||
RBAM_037740__ 184 AAAATGTTTTTGCATC----GTGTGGA------------ACAATCTATCA 217
BSNT_03836 229 GA-------------------AGGAA---AGGAA-GAAATTCAATCTCTT 255
|| ||||| .|||| |||||.| |||.|
RBAM_037740__ 218 GACAAATTGAAATCGGTAAGCAGGAAGTGTGGAATGAAATAC-ATCCC-- 264
BSNT_03836 256 TTAAAACCGGATCAAGGTGAAGTGTCTTTAGGCTTTTTACACACCCTGGG 305
||.|.|||..||| .|..|.||||| |||||.|...|.||.||
RBAM_037740__ 265 --AACAGCGGCACAA-TTTTATTGTCT------TTTTTGCCGTCGCTTGG 305
BSNT_03836 306 TACAACAATAGTTCCAAATTTAATTGGAACGTTTAAAGATAATTACCCAA 355
.|..|..||.|||||..||.|.||..|..|||||.||.|.|..||.||..
RBAM_037740__ 306 CATGAGTATGGTTCCGGATGTGATCAGCTCGTTTCAACACATGTATCCTC 355
BSNT_03836 356 AAGTTCAATTTCAACTAAACC--AGTCTCACTCTAATTTGC---TTTTAG 400
|.| |||||||..|.|..||| ||..||| |||..|| ||.|.|
RBAM_037740__ 356 ATG-TCAATTTTCAGTTGACCCAAGCATCA----AATCAGCAGATTATCG 400
BSNT_03836 401 ATAAACTAAAATCAGGTGAGCTTGATCTCTGCCT--ACTT-GCTTCTTTT 447
|..||.|||..|||.|.||..|.||..|| ||.| |||| |||||.|
RBAM_037740__ 401 AGCAATTAACGTCAAGAGAAGTGGACATC-GCATTGACTTCGCTTCGT-- 447
BSNT_03836 448 CCAGTCGAATCAAATATAATGTG----GAAACCC----TTATGGAAGGAG 489
|..||| ||..||.||||| |..|.|| ||| |..||.
RBAM_037740__ 448 ---GATGAA--AACGATGATGTGATCTGCCAGCCGCTTTTA---ACAGAA 489
BSNT_03836 490 GAGCTTTTTTTA----TTTTTGCCAAAAAAACATGTGTTAGCTACTC--G 533
|||.|.|.|||| |||.||| ..|||||..|.|.|| ||| .
RBAM_037740__ 490 GAGTTATATTTAGCCGTTTCTGC----TGAACATCCGCTCGC--CTCATA 533
BSNT_03836 534 TGAGGATATTACGTTAAACGAAAT-----AGCTAATGAGCCTTT----TG 574
|||.||.|||...||.| |||| ||| ||||.||.|| |.
RBAM_037740__ 534 TGATGAAATTGATTTGA---AAATGGCGGAGC--ATGAACCGTTTATCTC 578
BSNT_03836 575 TTTTAATGA-AAGAAGGTTTCGCCCTTC---GAGTGA--CAATAGATGAT 618
||||||.|| |..||.||| |||| |..||| .||.||.||
RBAM_037740__ 579 TTTTAAAGATACAAATGTT-----CTTCACGGCATGATTAAAGAGTTG-- 621
BSNT_03836 619 ATTTTTGAGCAAG-----TTAATATTACCCCAAACATTGTATTTGAAGGT 663
|.|||..||| | ||.|.||..|..|.||||||||.||.
RBAM_037740__ 622 ---TGTGAAAAAGCGGGAT-----TTTCACCGGATGTCGTATTTGAGGGA 663
BSNT_03836 664 GAAGAAGCTACAACAATCGCAGGTTTTGTTGCAG----CGGGT------- 702
||||| |.||||..||| |||||
RBAM_037740__ 664 GAAGA------------------TATTGTGACAGCTTCCGGGTTAGTCGG 695
BSNT_03836 703 -------CTTGGTGTTTCAATTCTCCCTGATTTTAAAGGCTTAGACCAAA 745
||.||.||.||..||.|||||||.||..|.|..||.||..|||
RBAM_037740__ 696 CGCTAAACTGGGGGTGTCTCTTATCCCTGACTTGCACGTTTTTGATAAAA 745
BSNT_03836 746 CGAATATCGCAAAGGTTCGGATTAGT-TGGCCAA---GGTTTGAGCGTAC 791
|.||..|| ||..||| |.||| |..|||| |.|.||.| |.
RBAM_037740__ 746 CAAAGGTC---AAACTTC---TCAGTGTCACCAATCCGATCTGTG---AA 786
BSNT_03836 792 AG-----TTGGCCTCTCTTGGATTAAAGGGAAGCAC------CTATCACC 830
|| ||||..|..|||||| ||||..|| .||||.||
RBAM_037740__ 787 AGAGAGATTGGTTTGGCTTGGA------GGAAAGACGGCTATTTATCGCC 830
BSNT_03836 831 TGTCA-CTGAAAACTTCAAGCAATATATCATCAATCAGTTTCCTCA---- 875
|.|| |.||.||.|| ||||.| ||||..|||
RBAM_037740__ 831 -GGCAGCGGAGAATTT-------TATAGC--------GTTTATTCAAACC 864
BSNT_03836 876 ------AATAGATTCGATATAG----------- 891
||.||| |.||
RBAM_037740__ 865 CGGCTTAACAGA------AAAGGGGGAAGATAA 891
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